Align Glutaminase-asparaginase; L-ASNase/L-GLNase; L-asparagine/L-glutamine amidohydrolase; EC 3.5.1.38 (characterized)
to candidate HSERO_RS07255 HSERO_RS07255 glutaminase
Query= SwissProt::O68897 (362 letters) >FitnessBrowser__HerbieS:HSERO_RS07255 Length = 356 Score = 438 bits (1127), Expect = e-128 Identities = 223/352 (63%), Positives = 273/352 (77%), Gaps = 5/352 (1%) Query: 11 GALALLLLFPVAAQAKEVETKTKLANVVILATGGTIAGAGASAANSATYQAAKVGIEQLI 70 GA+ +L L A A + + K NVV++ TGGTIAGAGAS+ N+A YQ+A V ++++I Sbjct: 10 GAVMILSL----ACAFSAQAQDKKPNVVVIGTGGTIAGAGASSVNTAAYQSAVVPVDKII 65 Query: 71 AGVPELSQIANVRGEQVMQIASESINNENLLQLGRRVAELADSKDVDGIVITHGTDTLEE 130 A VPE+S+IANVRGEQ+ QI SES N+E L++LG+RV+EL DVDGIVITHGTDT+EE Sbjct: 66 AAVPEISKIANVRGEQIFQIGSESFNDERLIKLGKRVSELLKQNDVDGIVITHGTDTIEE 125 Query: 131 TAYFLNLVEKTDKPIIVVGSMRPGTAMSADGMLNLYNAVAVAGSKDARGKGVLVTMNDEI 190 TAYFLNLV K+DKP++VVGSMRPGTA+ ADG LNLY+AV VAGSK+A GKG LV MNDEI Sbjct: 126 TAYFLNLVLKSDKPVVVVGSMRPGTALGADGALNLYDAVLVAGSKEAAGKGTLVVMNDEI 185 Query: 191 QSGRDVSKMINIKTEAFKSPWGPLGMVVEGKSYWFRLPAKRHTMDSEFDIKTIKSLPDVE 250 SGRDV+K K E F+SP+GPLG VVE K ++RLPA+ HT +EFDI I SLP V+ Sbjct: 186 HSGRDVTKSNTFKVETFRSPYGPLGYVVENKLSFYRLPARPHTTQTEFDIDKISSLPRVD 245 Query: 251 IAYGYGNVSDTAVKALAQAGAKAIIHAGTGNGSVSSKVVPALQELRKQGVQIIRSSHVNA 310 I Y YGNVS TA A AGAKAIIH GTGNGSV+ ++VP LQE+R +GVQ+IR+S + Sbjct: 246 IVYNYGNVSRTAYDAFVAAGAKAIIHDGTGNGSVAEQIVPVLQEVRSKGVQVIRASRTGS 305 Query: 311 GGFVLRNAEQPDDKYDWVVAHDLNPQKARILAMVALTKTQDSKELQRMFWEY 362 G V+RN EQPDDK+DWVV D N QKARILA +ALTKT D KELQ++ W+Y Sbjct: 306 -GVVIRNGEQPDDKFDWVVTDDQNAQKARILAELALTKTNDPKELQKIMWKY 356 Lambda K H 0.315 0.130 0.361 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 330 Number of extensions: 10 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 362 Length of database: 356 Length adjustment: 29 Effective length of query: 333 Effective length of database: 327 Effective search space: 108891 Effective search space used: 108891 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.5 bits) S2: 49 (23.5 bits)
Align candidate HSERO_RS07255 HSERO_RS07255 (glutaminase)
to HMM TIGR00520 (L-asparaginase, type II (EC 3.5.1.1))
../bin/blast/fastacmd -i /tmp/list.30983.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.30983.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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