Align Dihydrolipoyl dehydrogenase; Dihydrolipoamide dehydrogenase; E3 component of 2-oxoglutarate dehydrogenase complex; EC 1.8.1.4 (characterized)
to candidate HSERO_RS14875 HSERO_RS14875 dihydrolipoamide dehydrogenase
Query= SwissProt::P14218 (478 letters) >FitnessBrowser__HerbieS:HSERO_RS14875 Length = 475 Score = 514 bits (1325), Expect = e-150 Identities = 270/476 (56%), Positives = 338/476 (71%), Gaps = 7/476 (1%) Query: 1 MSQKFDVVVIGAGPGGYVAAIRAAQLGLKTACIEKYIGKEGKVALGGTCLNVGCIPSKAL 60 MS+ FDVVVIG GPGGY+AAIRAAQLG TACI+++ ++G A GGTC NVGCIPSKAL Sbjct: 1 MSKNFDVVVIGGGPGGYIAAIRAAQLGFNTACIDEWKNEKGGPAPGGTCTNVGCIPSKAL 60 Query: 61 LDSSYKYHEAKEAFKVHGIEAKGVTIDVPAMVARKANIVKNLTGGIATLFKANGVTSFEG 120 L SS Y A F HGIE KG+ +++ M+ RK +VK GI LFK N V+ F G Sbjct: 61 LQSSEHYEHASHGFAEHGIEVKGLGLNLEKMLGRKNTVVKQNNDGILYLFKKNKVSFFHG 120 Query: 121 HGKLLANK----QVEVTGLDGKTQVLEAENVIIASGSRPVEIPPAPLSDDIIVDSTGALE 176 G + +++V G +T + A++VI+A+GS +P A + +I+ +TGAL Sbjct: 121 RGSFVKGDANGYEIKVAGAAEET--ITAKHVIVATGSNARALPGAEFDEKLILSNTGALS 178 Query: 177 FQAVPKKLGVIGAGVIGLELGSVWARLGAEVTVLEALDKFLPAADEQIAKEALKVLTKQG 236 VPKKLGVIGAGVIGLE+GSVW RLGAEVTVLEAL FL A DEQIAKEA K+LTKQG Sbjct: 179 ITEVPKKLGVIGAGVIGLEMGSVWRRLGAEVTVLEALPTFLGAVDEQIAKEAQKLLTKQG 238 Query: 237 LNIRLGARVTASEVKKKQVTVTFTDANGEQKE-TFDKLIVAVGRRPVTTDLLAADSGVTL 295 L + LG ++ A + K V+V +TDA G+ FDKLIV++GR P T L A G+ L Sbjct: 239 LAVNLGVKIGAIKAGKNSVSVEYTDAKGDAHTGEFDKLIVSIGRTPNTIGLNAEGVGLKL 298 Query: 296 DERGFIYVDDHCKTSVPGVFAIGDVVRGAMLAHKASEEGVMVAERIAGHKAQMNYDLIPS 355 DERGFI VD CKT++P V+A+GDVVRG MLAHKA EEGV VAERIAG +N++ IP Sbjct: 299 DERGFIAVDGDCKTNLPNVWAVGDVVRGPMLAHKAEEEGVAVAERIAGQHGHVNFNTIPW 358 Query: 356 VIYTHPEIAWVGKTEQTLKAEGVEVNVGTFPFAASGRAMAANDTTGLVKVIADAKTDRVL 415 VIYT PEIAWVGKTEQ LKAEGV+ GTFPF A+GRA A DT+G+VK +ADAKTD +L Sbjct: 359 VIYTSPEIAWVGKTEQQLKAEGVQYKAGTFPFLANGRARALGDTSGMVKFLADAKTDEIL 418 Query: 416 GVHVIGPSAAELVQQGAIGMEFGTSAEDLGMMVFSHPTLSEALHEAALAVNGHAIH 471 GVH++GP A+EL+ + + MEF S+ED+ + +HP+LSEA EAALAV+ A++ Sbjct: 419 GVHIVGPMASELISEAVVAMEFRASSEDIARICHAHPSLSEATKEAALAVDKRALN 474 Lambda K H 0.316 0.134 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 682 Number of extensions: 33 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 478 Length of database: 475 Length adjustment: 33 Effective length of query: 445 Effective length of database: 442 Effective search space: 196690 Effective search space used: 196690 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 51 (24.3 bits)
Align candidate HSERO_RS14875 HSERO_RS14875 (dihydrolipoamide dehydrogenase)
to HMM TIGR01350 (lpdA: dihydrolipoyl dehydrogenase (EC 1.8.1.4))
../bin/blast/fastacmd -i /tmp/list.14236.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.14236.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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