GapMind for catabolism of small carbon sources

 

Alignments for a candidate for gloA in Herbaspirillum seropedicae SmR1

Align lactoylglutathione lyase (EC 4.4.1.5) (characterized)
to candidate HSERO_RS03550 HSERO_RS03550 glyoxalase I

Query= BRENDA::Q9HY85
         (128 letters)



>FitnessBrowser__HerbieS:HSERO_RS03550
          Length = 134

 Score =  218 bits (555), Expect = 2e-62
 Identities = 100/126 (79%), Positives = 112/126 (88%)

Query: 1   MRILHTMIRVGNIDRSIDFYTRVLGMTLLRKNDYPDGQFTLAFVGYGNEADSAVIELTHN 60
           +R+LHTM+RVGN+DRSIDFYT+VLGM LLRKNDYPDG+FTLAFVGYG E D  V+ELTHN
Sbjct: 1   VRMLHTMLRVGNLDRSIDFYTQVLGMKLLRKNDYPDGKFTLAFVGYGEERDHTVLELTHN 60

Query: 61  WGVDAYEIGTGYGHIAIEVDDAYQACDDIRYNGGQVTREAGPMKHGTTVIAFVTDPDGYK 120
           W  D+Y++GTGYGHIAIEVDDAY ACD ++  GG VTREAGPMKHG TVIAFVTDPDGYK
Sbjct: 61  WDTDSYDLGTGYGHIAIEVDDAYAACDAVKAKGGTVTREAGPMKHGKTVIAFVTDPDGYK 120

Query: 121 IELIQK 126
           IE IQK
Sbjct: 121 IEFIQK 126


Lambda     K      H
   0.321    0.140    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 138
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 128
Length of database: 134
Length adjustment: 14
Effective length of query: 114
Effective length of database: 120
Effective search space:    13680
Effective search space used:    13680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 41 (20.4 bits)

Align candidate HSERO_RS03550 HSERO_RS03550 (glyoxalase I)
to HMM TIGR00068 (gloA: lactoylglutathione lyase (EC 4.4.1.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.12316.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.12316.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.