Align phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) (EC 5.4.2.2) (characterized)
to candidate HSERO_RS13360 HSERO_RS13360 phosphoglucomutase
Query= BRENDA::A0A0H3NJ17 (546 letters) >FitnessBrowser__HerbieS:HSERO_RS13360 Length = 549 Score = 616 bits (1589), Expect = 0.0 Identities = 314/545 (57%), Positives = 395/545 (72%), Gaps = 2/545 (0%) Query: 2 AIHNRAGQPAQQSDLINVAQLTAQYYVLKPEAGNAEHAVKFGTSGHRGSAGRHSFNEPHI 61 +++ AGQ A S L+++ L + YY L+P+ A H V FGTSGHRG+A HSFNE H+ Sbjct: 3 SVNPLAGQRAAPSALVDLPVLVSNYYSLRPDVAEASHRVAFGTSGHRGNANAHSFNEWHV 62 Query: 62 LAIAQAIAEERAKNGITGPCYVGKDTHALSEPAFISVLEVLAANGVDVIVQENNGFTPTP 121 LAI QAI + R + G GP ++G DTHALSEPA+ S LEVLAAN V ++ E + + PTP Sbjct: 63 LAITQAICDYRKEQGFKGPLFLGIDTHALSEPAWHSALEVLAANEVVTMLAEGSPYAPTP 122 Query: 122 AVSNAILVHNK-KGGPLADGIVITPSHNPPEDGGIKYNPPNGGPADTNVTKVVEDRANAL 180 AVS+AIL HN+ LADGIV+TPSHNPP++GG KYN PNGGP+D+NVT +E RANA Sbjct: 123 AVSHAILTHNRVHRDALADGIVVTPSHNPPDNGGFKYNMPNGGPSDSNVTGWIEQRANAY 182 Query: 181 LAGGLQGVKRISLDAAMASGHVKAVDLVQPFVEGLADIVDMAAIQKAGLTLGVDPLGGSG 240 L LQGV+R+S + A+ + + D + +V L +I+D+AAI A + +GVDPLGG+G Sbjct: 183 LEQQLQGVRRVSFEKALKADTTRRYDYLDNYVSDLPNIIDLAAISGANVKIGVDPLGGAG 242 Query: 241 IEYWKRIAEHYKLNLTLVNDQVDQTFRFMHLDKDGAIRMDCSSECAMAGLLALRDKFDLA 300 + YW IA+ YKLNL +VN +VD TFRF+ LD D IRMD SS AM+ L+AL+D+FD+A Sbjct: 243 LHYWSAIADRYKLNLEVVNTEVDATFRFVPLDWDAQIRMDPSSPHAMSELIALKDRFDVA 302 Query: 301 FANDPDYDRHGIVTPA-GLMNPNHYLAVAINYLFQHRPLWGKDVAVGKTLVSSAMIDRVV 359 A D D+DRHGIV + GLM N YL+VA+ YLF+HRP W D A+GKTLVSS MI+RV Sbjct: 303 MACDTDHDRHGIVAKSRGLMPANDYLSVAVYYLFRHRPAWRADAAIGKTLVSSQMINRVA 362 Query: 360 NDLGRKLVEVPVGFKWFVDGLFDGSFGFGGEESAGASFLRFDGTPWSTDKDGIIMCLLAA 419 L RKL+E+PVGFKWFVDGL+DGS FG EESAGASF+RFDG PWSTDKDGI LLAA Sbjct: 363 KHLERKLLEMPVGFKWFVDGLYDGSLAFGCEESAGASFVRFDGQPWSTDKDGITAALLAA 422 Query: 420 EITAVTGKNPQEHYNELAARFGAPSYNRLQASATSAQKAALSKLSPEMVSASTLAGDPIT 479 E+TA TG +P + Y +L + GAP R +A+AT QKA LSKLSP+ VS++ LAG+PI Sbjct: 423 EMTARTGNDPGQIYEDLTHQLGAPLNGRKEAAATPEQKARLSKLSPQDVSSTELAGEPIR 482 Query: 480 ARLTAAPGNGASIGGLKVMTDNGWFAARPSGTEDAYKIYCESFLGEEHRKQIEKEAVEIV 539 LT AP NG GGLK++TDNGWFAARPSGTE YKIY ESF + H +I EA +IV Sbjct: 483 EVLTTAPANGKPFGGLKIVTDNGWFAARPSGTESIYKIYGESFRDQAHLDKIFAEAQDIV 542 Query: 540 SEVLK 544 + L+ Sbjct: 543 TRALQ 547 Lambda K H 0.316 0.134 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 895 Number of extensions: 38 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 546 Length of database: 549 Length adjustment: 36 Effective length of query: 510 Effective length of database: 513 Effective search space: 261630 Effective search space used: 261630 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 53 (25.0 bits)
Align candidate HSERO_RS13360 HSERO_RS13360 (phosphoglucomutase)
to HMM TIGR01132 (pgm: phosphoglucomutase, alpha-D-glucose phosphate-specific (EC 5.4.2.2))
../bin/blast/fastacmd -i /tmp/list.20854.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.20854.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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