GapMind for catabolism of small carbon sources

 

Alignments for a candidate for astA in Escherichia coli BW25113

Align Arginine N-succinyltransferase; AST; AOST; EC 2.3.1.109 (characterized)
to candidate 15865 b1747 arginine succinyltransferase (NCBI)

Query= SwissProt::P0AE37
         (344 letters)



>FitnessBrowser__Keio:15865
          Length = 344

 Score =  696 bits (1797), Expect = 0.0
 Identities = 344/344 (100%), Positives = 344/344 (100%)

Query: 1   MMVIRPVERSDVSALMQLASKTGGGLTSLPANEATLSARIERAIKTWQGELPKSEQGYVF 60
           MMVIRPVERSDVSALMQLASKTGGGLTSLPANEATLSARIERAIKTWQGELPKSEQGYVF
Sbjct: 1   MMVIRPVERSDVSALMQLASKTGGGLTSLPANEATLSARIERAIKTWQGELPKSEQGYVF 60

Query: 61  VLEDSETGTVAGICAIEVAVGLNDPWYNYRVGTLVHASKELNVYNALPTLFLSNDHTGSS 120
           VLEDSETGTVAGICAIEVAVGLNDPWYNYRVGTLVHASKELNVYNALPTLFLSNDHTGSS
Sbjct: 61  VLEDSETGTVAGICAIEVAVGLNDPWYNYRVGTLVHASKELNVYNALPTLFLSNDHTGSS 120

Query: 121 ELCTLFLDPDWRKEGNGYLLSKSRFMFMAAFRDKFNDKVVAEMRGVIDEHGYSPFWQSLG 180
           ELCTLFLDPDWRKEGNGYLLSKSRFMFMAAFRDKFNDKVVAEMRGVIDEHGYSPFWQSLG
Sbjct: 121 ELCTLFLDPDWRKEGNGYLLSKSRFMFMAAFRDKFNDKVVAEMRGVIDEHGYSPFWQSLG 180

Query: 181 KRFFSMDFSRADFLCGTGQKAFIAELMPKHPIYTHFLSQEAQDVIGQVHPQTAPARAVLE 240
           KRFFSMDFSRADFLCGTGQKAFIAELMPKHPIYTHFLSQEAQDVIGQVHPQTAPARAVLE
Sbjct: 181 KRFFSMDFSRADFLCGTGQKAFIAELMPKHPIYTHFLSQEAQDVIGQVHPQTAPARAVLE 240

Query: 241 KEGFRYRNYIDIFDGGPTLECDIDRVRAIRKSRLVEVAEGQPAQGDFPACLVANENYHHF 300
           KEGFRYRNYIDIFDGGPTLECDIDRVRAIRKSRLVEVAEGQPAQGDFPACLVANENYHHF
Sbjct: 241 KEGFRYRNYIDIFDGGPTLECDIDRVRAIRKSRLVEVAEGQPAQGDFPACLVANENYHHF 300

Query: 301 RVVLVRTDPATERLILTAAQLDALKCHAGDRVRLVRLCAEEKTA 344
           RVVLVRTDPATERLILTAAQLDALKCHAGDRVRLVRLCAEEKTA
Sbjct: 301 RVVLVRTDPATERLILTAAQLDALKCHAGDRVRLVRLCAEEKTA 344


Lambda     K      H
   0.321    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 586
Number of extensions: 7
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 344
Length adjustment: 29
Effective length of query: 315
Effective length of database: 315
Effective search space:    99225
Effective search space used:    99225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)

Align candidate 15865 b1747 (arginine succinyltransferase (NCBI))
to HMM TIGR03244 (astA: arginine N-succinyltransferase (EC 2.3.1.109))

Software error:

../bin/blast/fastacmd -i /tmp/list.21369.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.21369.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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