Align ornithine carbamoyltransferase, subunit I; EC 2.1.3.3 (characterized)
to candidate 18279 b4254 ornithine carbamoyltransferase 1 (NCBI)
Query= CharProtDB::CH_004146 (334 letters) >FitnessBrowser__Keio:18279 Length = 334 Score = 668 bits (1724), Expect = 0.0 Identities = 334/334 (100%), Positives = 334/334 (100%) Query: 1 MSGFYHKHFLKLLDFTPAELNSLLQLAAKLKADKKSGKEEAKLTGKNIALIFEKDSTRTR 60 MSGFYHKHFLKLLDFTPAELNSLLQLAAKLKADKKSGKEEAKLTGKNIALIFEKDSTRTR Sbjct: 1 MSGFYHKHFLKLLDFTPAELNSLLQLAAKLKADKKSGKEEAKLTGKNIALIFEKDSTRTR 60 Query: 61 CSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGYGQEIVETLAEY 120 CSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGYGQEIVETLAEY Sbjct: 61 CSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGYGQEIVETLAEY 120 Query: 121 ASVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDARNNMGNSMLEAAALT 180 ASVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDARNNMGNSMLEAAALT Sbjct: 121 ASVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDARNNMGNSMLEAAALT 180 Query: 181 GLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTDVWVSMGEA 240 GLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTDVWVSMGEA Sbjct: 181 GLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTDVWVSMGEA 240 Query: 241 KEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCLPAFHDDQTTLGKKMAEEFGLHGGME 300 KEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCLPAFHDDQTTLGKKMAEEFGLHGGME Sbjct: 241 KEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCLPAFHDDQTTLGKKMAEEFGLHGGME 300 Query: 301 VTDEVFESAASIVFDQAENRMHTIKAVMVATLSK 334 VTDEVFESAASIVFDQAENRMHTIKAVMVATLSK Sbjct: 301 VTDEVFESAASIVFDQAENRMHTIKAVMVATLSK 334 Lambda K H 0.317 0.132 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 489 Number of extensions: 7 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 334 Length of database: 334 Length adjustment: 28 Effective length of query: 306 Effective length of database: 306 Effective search space: 93636 Effective search space used: 93636 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 49 (23.5 bits)
Align candidate 18279 b4254 (ornithine carbamoyltransferase 1 (NCBI))
to HMM TIGR00658 (argF: ornithine carbamoyltransferase (EC 2.1.3.3))
../bin/blast/fastacmd -i /tmp/list.23881.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.23881.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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