Align Malate synthase G (EC 2.3.3.9) (characterized)
to candidate Ga0059261_2979 Ga0059261_2979 malate synthase (EC 2.3.3.9)
Query= reanno::psRCH2:GFF353 (726 letters) >FitnessBrowser__Korea:Ga0059261_2979 Length = 700 Score = 827 bits (2137), Expect = 0.0 Identities = 433/724 (59%), Positives = 523/724 (72%), Gaps = 26/724 (3%) Query: 1 MTERVQVGGLQVAKVLYDFVNNEAIPGTGVDAAAFWAGADSVIHDLAPKNRALLAKRDDL 60 MT V GL VA+ L FV +PG G+DA FW+GA ++ AP+NRALL RD L Sbjct: 1 MTAYVTRAGLSVAEPLARFVEERVLPGPGIDADVFWSGAAAIFARFAPRNRALLDTRDSL 60 Query: 61 QAQIDAWHQARAGQAHDAVAYKSFLQEIGYLLPEAEDFQATTENVDEEIARMAGPQLVVP 120 QAQIDAW +A D A ++FL+ IGYL+ + F TT +VD EIA MAGPQLVVP Sbjct: 61 QAQIDAWCAEDPARAADPAAQEAFLRGIGYLVDQPGAFTVTTADVDAEIATMAGPQLVVP 120 Query: 121 IMNARFALNAANARWGSLYDALYGTDAISEADGASKGPGYNEIRGNKVIAYARNFLNEAA 180 +NARF LNAANARWGSLYDA YGTDA+ GA++ GY+ RG +VIA A+ FL+EA Sbjct: 121 ALNARFVLNAANARWGSLYDAFYGTDALP---GAARAGGYDAERGAQVIAAAKAFLDEAV 177 Query: 181 PLETGSHVDSTGYRIEGGKLVVSLKDGSTTGLKNPAQLQGFQGEASAPIAVLLKNNGIHF 240 PL VD GG L L +P QL G +G++ +L ++NG+H Sbjct: 178 PLAGMKWVD-----FAGGDLP----------LADPGQLVGTRGDS-----LLFRHNGLHI 217 Query: 241 EIQIDPASPIGQTDAAGVKDILMESALTTIMDCEDSIAAVDADDKTVVYRNWLGLMKGDL 300 E+ ID S IG+TD AG+ D+L+E+ALTTI+D EDSIAAVDADDK Y NWLGLM+GDL Sbjct: 218 EVVIDRDSTIGRTDPAGIADVLLEAALTTIVDLEDSIAAVDADDKVAAYSNWLGLMRGDL 277 Query: 301 VEELEKGGKRITRAMNPDRVYTKADGNGELTLHGRSLLFIRNVGHLMTNDAILDKEGNEV 360 VE +KGGK +TR + DRVY + + +L L GRSLLF+RNVGHLMTN A+L +G+E Sbjct: 278 VETFDKGGKTLTRRLAEDRVYQRPFAS-DLVLPGRSLLFVRNVGHLMTNPAVLI-DGDEA 335 Query: 361 PEGIMDGLFTSLIAVHNLNGNTSRKNTRTGSMYIVKPKMHGPEEVAFATELFGRVEDVLG 420 PEGI+D + TS IA+H+L G + +N+RTGS+YIVKPKMHGP+E AF +LF VED+LG Sbjct: 336 PEGILDAIVTSTIALHDLKGLGTHRNSRTGSVYIVKPKMHGPDEAAFTNDLFDAVEDLLG 395 Query: 421 LPRNTLKVGIMDEERRTTINLKACIKEARERVVFINTGFLDRTGDEIHTSMEAGPMVRKA 480 L R+T+KVG+MDEERRT+ NL ACI + R+ FINTGFLDRTGDEIH+SM AGPM+ KA Sbjct: 396 LDRHTIKVGVMDEERRTSANLAACIHAVKGRIAFINTGFLDRTGDEIHSSMRAGPMIPKA 455 Query: 481 AMKAEKWISAYENNNVDVGLACGLQGKAQIGKGMWAMPDLMAAMLEQKVGHPMAGANTAW 540 MKA WI AYE+ NV +GLA GL G+AQIGKGMWA PD MA MLE KVGHP +GANTAW Sbjct: 456 EMKASSWIKAYEDRNVRIGLAHGLSGRAQIGKGMWAAPDRMAEMLEVKVGHPQSGANTAW 515 Query: 541 VPSPTAATLHAMHYHKIDVQARQVELAKREKASIDDILTIPL-AQDTNWSEEEKRNELDN 599 VPSPTAATLHAMHYH +DV ARQ E+A + +LTIP+ A NW+ E+ ELDN Sbjct: 516 VPSPTAATLHAMHYHTVDVFARQREIAGETVPGLAPLLTIPVAAPGRNWTPEDVARELDN 575 Query: 600 NSQGILGYMVRWVEQGVGCSKVPDINDIALMEDRATLRISSQHVANWMRHGVVTKDQVVE 659 N+QGILGY+VRW++QGVGCSKVPDINDI LMEDRATLRISSQH+ANW+ HGV T V Sbjct: 576 NAQGILGYVVRWIDQGVGCSKVPDINDIGLMEDRATLRISSQHMANWLLHGVATAADVDA 635 Query: 660 SLKRMAPVVDRQNQGDPLYRPMAPDFDNSVAFQAALELVLEGTKQPNGYTEPVLHRRRRE 719 +L RMA VD QN GDPLYRPMA + S+AFQAA LV +G QPNGYTEP+LHR R E Sbjct: 636 ALVRMAAKVDAQNAGDPLYRPMAGNEAASLAFQAARALVFDGVAQPNGYTEPLLHRFRAE 695 Query: 720 FKAK 723 KA+ Sbjct: 696 AKAR 699 Lambda K H 0.316 0.133 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1403 Number of extensions: 47 Number of successful extensions: 6 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 726 Length of database: 700 Length adjustment: 39 Effective length of query: 687 Effective length of database: 661 Effective search space: 454107 Effective search space used: 454107 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 55 (25.8 bits)
Align candidate Ga0059261_2979 Ga0059261_2979 (malate synthase (EC 2.3.3.9))
to HMM TIGR01345 (glcB: malate synthase G (EC 2.3.3.9))
../bin/blast/fastacmd -i /tmp/list.11265.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.11265.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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