Align N-succinylglutamate 5-semialdehyde dehydrogenase; Succinylglutamic semialdehyde dehydrogenase; SGSD; EC 1.2.1.71 (characterized)
to candidate Ga0059261_1495 Ga0059261_1495 succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
Query= SwissProt::O50174 (487 letters) >FitnessBrowser__Korea:Ga0059261_1495 Length = 480 Score = 454 bits (1168), Expect = e-132 Identities = 241/460 (52%), Positives = 305/460 (66%), Gaps = 7/460 (1%) Query: 15 GETLESLDPVGQGVVWSGRGADATQVDAAVCAAREAFPAWARRPLEQRIELLERFAATLK 74 G + S +P V+W D VDA V AAR ++ WA RPL RIE L RFA ++ Sbjct: 12 GSEIISTEPATGAVLWRRPIGD---VDAEVAAARASWADWAARPLTYRIEALRRFANVVR 68 Query: 75 SRADELARVIGEETGKPLWESATEVTSMVNKVAISVQAFRERTGEK--SGPLADATAVLR 132 +++ +I ETGKPLWE+ TEV +++ KV ISV AF ERTG++ P+ A LR Sbjct: 69 QKSEAFTDLIARETGKPLWEARTEVETVIAKVDISVTAFSERTGQRRIEAPMNTRLA-LR 127 Query: 133 HKPHGVVAVFGPYNFPGHLPNGHIVPALLAGNCVVFKPSELTPKVAELTLKAWIQAGLPA 192 HKPHGV+AV GPYNFP HLPNGHIVPALLAGN VVFKPSE TP ++ + AG+P Sbjct: 128 HKPHGVLAVLGPYNFPAHLPNGHIVPALLAGNAVVFKPSEKTPATGAFLVECYHAAGIPE 187 Query: 193 GVLNLVQGGRETGVALAAHRGLDGLFFTGSSRTGNLLHSQFGGQPQKILALEMGGNNPLV 252 G + L+ GG + G ALA H G+DGL FTGS+RTG L+ F +P+KILALEMGGNNP++ Sbjct: 188 GCIRLLIGGPDEGKALAGHDGIDGLLFTGSARTGIALNRAFAAKPEKILALEMGGNNPIL 247 Query: 253 VEEVADLDAAVYTIIQSAFISAGQRCTCARRLLVPQGAWGDALLARLVAVSATLRVGRFD 312 V D+ +A +IQSAF SAGQRCT ARRL+V + + D LL + + L VG Sbjct: 248 VWSTPDIYSAAVLVIQSAFTSAGQRCTAARRLIVDEKLY-DPLLEEVNKLIGRLIVGEPH 306 Query: 313 EQPAPFMGAVISLSAAEHLLKAQEHLIGKGAQPLLAMTQPIDGAALLTPGILDVSAVAER 372 PAPFMG VI A+ L ++ L G +PL M +P+DG LTP ++D++ E+ Sbjct: 307 ADPAPFMGPVIDNDTADLLTESFLELSFMGGRPLRHMERPVDGRPFLTPAMIDMTDAKEK 366 Query: 373 PDEEFFGPLLQVIRYSDFAAAIREANATQYGLAAGLLSDSRERFEQFLVESRAGIVNWNK 432 PD E FGP+LQVIR F AI EAN T+YGL+A L+S + ++QF RAGIVNWN+ Sbjct: 367 PDVELFGPILQVIRARTFEEAIAEANNTRYGLSASLVSQDPKLYDQFWANIRAGIVNWNR 426 Query: 433 QLTGAASSAPFGGIGASGNHRPSAYYAADYCAYPVASLES 472 GA+S+APFGGIG SGNHRPSA+YAADYCAYPV S E+ Sbjct: 427 PTNGASSAAPFGGIGWSGNHRPSAFYAADYCAYPVVSSEA 466 Lambda K H 0.318 0.134 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 695 Number of extensions: 32 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 487 Length of database: 480 Length adjustment: 34 Effective length of query: 453 Effective length of database: 446 Effective search space: 202038 Effective search space used: 202038 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 52 (24.6 bits)
Align candidate Ga0059261_1495 Ga0059261_1495 (succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71))
to HMM TIGR03240 (astD: succinylglutamate-semialdehyde dehydrogenase (EC 1.2.1.71))
../bin/blast/fastacmd -i /tmp/list.17756.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.17756.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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