Align isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) (characterized)
to candidate Ga0059261_0194 Ga0059261_0194 isocitrate dehydrogenase (NADP) (EC 1.1.1.42)
Query= BRENDA::A5U813 (409 letters) >FitnessBrowser__Korea:Ga0059261_0194 Length = 407 Score = 603 bits (1554), Expect = e-177 Identities = 294/405 (72%), Positives = 338/405 (83%), Gaps = 3/405 (0%) Query: 6 KIKVSGPVVELDGDEMTRVIWKLIKDMLILPYLDIRLDYYDLGIEHRDATDDQVTIDAAY 65 KIKV PVVE+DGDEMTR+IW+ I++ LI PYLDI L YYDLG+E RD T+DQ+T+DAA Sbjct: 3 KIKVKNPVVEIDGDEMTRIIWEWIRERLIKPYLDIDLKYYDLGVEKRDETNDQITVDAAN 62 Query: 66 AIKKHGVGVKCATITPDEARVEEFNLKKMWLSPNGTIRNILGGTIFREPIVISNVPRLVP 125 AIK+ GVGVKCATITPDEARVEEFNLK+MW SPNGTIRNILGG +FREPIVISNVPRL+P Sbjct: 63 AIKEFGVGVKCATITPDEARVEEFNLKEMWKSPNGTIRNILGGVVFREPIVISNVPRLIP 122 Query: 126 GWTKPIVIGRHAFGDQYRATNFKVDQPGTVTLTFTPADGSAPIVHEMVSIPEDGGVVLGM 185 GWTKPIV+GRHAFGDQYRAT+ K+ PG + L F ADG I E+ + P G V + M Sbjct: 123 GWTKPIVVGRHAFGDQYRATDVKIPGPGKLRLVFEGADGEV-IDREVFNFPSSG-VAMAM 180 Query: 186 YNFKESIRDFARASFSYGLNAKWPVYLSTKNTILKAYDGMFKDEFERVYEEE-FKAQFEA 244 YN +SIRDFARASF+YGLN KWPVYLSTKNTILKAYDG FKD F+ V++ E FK +F Sbjct: 181 YNLDDSIRDFARASFNYGLNLKWPVYLSTKNTILKAYDGRFKDLFQEVFDNEGFKEKFAE 240 Query: 245 AGLTYEHRLIDDMVAACLKWEGGYVWACKNYDGDVQSDTVAQGYGSLGLMTSVLMTADGK 304 AG+ YEHRLIDDMVA+ LKW G +VWACKNYDGDVQSD VAQG+GSLGLMTSVL++ DGK Sbjct: 241 AGIVYEHRLIDDMVASALKWSGEFVWACKNYDGDVQSDQVAQGFGSLGLMTSVLLSPDGK 300 Query: 305 TVEAEAAHGTVTRHYRQYQAGKPTSTNPIASIFAWTRGLQHRGKLDGTPEVIDFAHKLES 364 TVEAEAAHGTVTRHYRQ+Q GK TSTNPIASIFAWT GL+ RGK D TPEV+ FA LE Sbjct: 301 TVEAEAAHGTVTRHYRQHQQGKATSTNPIASIFAWTGGLKFRGKFDETPEVVKFAETLER 360 Query: 365 VVIATVESGKMTKDLAILIGPEQDWLNSEEFLDAIADNLEKELAN 409 V I TVESGKMTKDLA+LIGP+Q W+ +E+F +AI +NLE E+A+ Sbjct: 361 VCIETVESGKMTKDLALLIGPDQPWMTTEQFFEAIRENLETEMAS 405 Lambda K H 0.318 0.136 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 643 Number of extensions: 19 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 409 Length of database: 407 Length adjustment: 31 Effective length of query: 378 Effective length of database: 376 Effective search space: 142128 Effective search space used: 142128 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.9 bits)
Align candidate Ga0059261_0194 Ga0059261_0194 (isocitrate dehydrogenase (NADP) (EC 1.1.1.42))
to HMM TIGR00127 (isocitrate dehydrogenase, NADP-dependent (EC 1.1.1.42))
../bin/blast/fastacmd -i /tmp/list.14864.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.14864.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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