Align ornithine carbamoyltransferase (EC 2.1.3.3) (characterized)
to candidate Ga0059261_3206 Ga0059261_3206 ornithine carbamoyltransferase
Query= BRENDA::Q98BB6 (303 letters) >FitnessBrowser__Korea:Ga0059261_3206 Length = 307 Score = 308 bits (789), Expect = 1e-88 Identities = 162/308 (52%), Positives = 203/308 (65%), Gaps = 10/308 (3%) Query: 1 MSVRHFTDLSTVSEGDLRFMLDDAVVRKARLKAGE------RTRPLEGKVLAMIFDKPST 54 M+ R+F LS + ML DA+ RK R +AG+ PL G+ LAM+F+K ST Sbjct: 1 MTYRNFLSLSDAGADGIAAMLADAIDRK-RARAGQPKGAVDADAPLAGRTLAMVFEKNST 59 Query: 55 RTRVSFDVGMRQLGGETIMLTGTEMQLGRSETIADTAKVLSRYVDAIMIRTTSHDRLLEL 114 RTRVSF++ +RQLGG ++L QLGR ET+ADTA+VLS Y DAIM+RT H +LLE+ Sbjct: 60 RTRVSFEMAIRQLGGSAVVLDAATSQLGRGETVADTARVLSGYCDAIMVRTDDHAKLLEM 119 Query: 115 TENATVPVINGLTDDTHPCQLMADIMTFEEHRGPVAGKTIAWTGDGNNVLHSLLEASARF 174 + ATVPVINGLTDD+HPCQ+MAD+ T E + G +AW GDGNNVL S++EA+ Sbjct: 120 AQYATVPVINGLTDDSHPCQIMADLQTILESGKALPGLKVAWLGDGNNVLASIVEAAGLM 179 Query: 175 RFNLNVAVPEGSEPAQKHIDWSKAHGGKLHFTRSPEEAVDQADCVVTDCWVSMGQEHRAR 234 F++ A P+ ++ + K G+ P EAV AD VVTD W+SMGQ H Sbjct: 180 HFDVVAACPQSFALPEEAMALGK---GRARTVNDPVEAVAGADVVVTDTWISMGQAHADV 236 Query: 235 GHNVFSPYQVNAKLMAHAKPDALFMHCLPAHRGEEVTDEVIDGPHSVVFDEAENRLHAQK 294 +PYQV LMA A PDA F+HCLPAHRGEEVTD VIDGP S+++ EAENRLHAQK Sbjct: 237 KLAALAPYQVTEALMAQASPDAKFLHCLPAHRGEEVTDAVIDGPQSLIWPEAENRLHAQK 296 Query: 295 AVLAWCLG 302 AVL WC G Sbjct: 297 AVLRWCFG 304 Lambda K H 0.320 0.133 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 321 Number of extensions: 14 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 303 Length of database: 307 Length adjustment: 27 Effective length of query: 276 Effective length of database: 280 Effective search space: 77280 Effective search space used: 77280 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 48 (23.1 bits)
Align candidate Ga0059261_3206 Ga0059261_3206 (ornithine carbamoyltransferase)
to HMM TIGR00658 (argF: ornithine carbamoyltransferase (EC 2.1.3.3))
../bin/blast/fastacmd -i /tmp/list.11805.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.11805.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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