Align Beta-ketothiolase BktB; Acetyl-CoA acetyltransferase; Acetyl-CoA acyltransferase; EC 2.3.1.16; EC 2.3.1.9 (characterized)
to candidate Ga0059261_2888 Ga0059261_2888 acetyl-CoA acetyltransferases
Query= SwissProt::Q0KBP1 (394 letters) >FitnessBrowser__Korea:Ga0059261_2888 Length = 393 Score = 487 bits (1254), Expect = e-142 Identities = 247/391 (63%), Positives = 303/391 (77%), Gaps = 1/391 (0%) Query: 4 EVVVVSGVRTAIGTFGGSLKDVAPAELGALVVREALARAQVSGDDVGHVVFGNVIQTEPR 63 +V+++SGVRTAIG FGG+LK+V A+LGALV+ EA+ARA ++ D VGHVV GNVI + P Sbjct: 3 DVLILSGVRTAIGDFGGALKNVPAADLGALVIGEAIARAGIAADAVGHVVMGNVIPSTPS 62 Query: 64 DMYLGRVAAVNGGVTINAPALTVNRLCGSGLQAIVSAAQTILLGDTDVAIGGGAESMSRA 123 D YL RVAAV GV + PALTVNRLCGSGLQAI+SAAQ I LG+ VA+ GGAE+MS+A Sbjct: 63 DAYLARVAAVRAGVPVAVPALTVNRLCGSGLQAIISAAQGIALGECGVAVAGGAENMSQA 122 Query: 124 PYLAPAARWGARMGDAGLVDMMLGALHDPFHRIHMGVTAENVAKEYDISRAQQDEAALES 183 P+ +AR+G +MGD ++D + L DPF ++HMGVTAENVA + I RA QDEAA+ES Sbjct: 123 PHYVASARFGQKMGDIQMLDALTRTLSDPFDQVHMGVTAENVAAQCGIDRAAQDEAAVES 182 Query: 184 HRRASAAIKAGYFKDQIVPVVSKGRKGDVTFDTDEHVRHDATIDDMTKLRPVFVKENGTV 243 HRR + AI G F+DQIVPV K R G V FDTDEHVR + T++DM +LRP F + +GTV Sbjct: 183 HRRGARAIAEGRFRDQIVPVEIKSRGGTVMFDTDEHVRAEVTLEDMARLRPAF-QRDGTV 241 Query: 244 TAGNASGLNDAAAAVVMMERAEAERRGLKPLARLVSYGHAGVDPKAMGIGPVPATKIALE 303 TAGNASG+ND AAAVV+ EA+R G KPLAR++ +GHAGV+P+ MG+GPV A IAL Sbjct: 242 TAGNASGINDGAAAVVLGSPEEAQRLGAKPLARILGWGHAGVEPRVMGLGPVEAVPIALR 301 Query: 304 RAGLQVSDLDVIEANEAFAAQACAVTKALGLDPAKVNPNGSGISLGHPIGATGALITVKA 363 RAG+ + +DVIE+NEAFAAQACAV+ LG DP K N NGSGISLGHP+GATGA+ TVK Sbjct: 302 RAGVTLDRIDVIESNEAFAAQACAVSAQLGFDPEKTNVNGSGISLGHPVGATGAINTVKL 361 Query: 364 LHELNRVQGRYALVTMCIGGGQGIAAIFERI 394 L+EL R GR LVTMCIGGGQGIA + ER+ Sbjct: 362 LYELQRSGGRLGLVTMCIGGGQGIALVIERL 392 Lambda K H 0.318 0.134 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 541 Number of extensions: 19 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 394 Length of database: 393 Length adjustment: 31 Effective length of query: 363 Effective length of database: 362 Effective search space: 131406 Effective search space used: 131406 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.9 bits)
Align candidate Ga0059261_2888 Ga0059261_2888 (acetyl-CoA acetyltransferases)
to HMM TIGR01930 (acetyl-CoA C-acyltransferase (EC 2.3.1.16))
../bin/blast/fastacmd -i /tmp/list.14724.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.14724.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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