Align dihydrolipoyl dehydrogenase (EC 1.8.1.4) (characterized)
to candidate Ga0059261_1343 Ga0059261_1343 dihydrolipoamide dehydrogenase (EC 1.8.1.4)
Query= BRENDA::A0A0H2ZHZ0 (467 letters) >FitnessBrowser__Korea:Ga0059261_1343 Length = 464 Score = 513 bits (1321), Expect = e-150 Identities = 261/463 (56%), Positives = 345/463 (74%), Gaps = 12/463 (2%) Query: 5 YDVIVIGAGPGGYNAAIRAGQLGLKVACVEGRETLGGTCLNVGCMPSKALLHASELYAAA 64 +DV+VIG+GPGGY AAIRA QLGLK AC EGRETLGGTCLNVGC+PSKALLHASELY A Sbjct: 6 FDVLVIGSGPGGYVAAIRAAQLGLKTACAEGRETLGGTCLNVGCIPSKALLHASELYEEA 65 Query: 65 SGGEFARLGIRVSP-ELDLAQMMKQKDESVAALTRGVEFLFRKHKVQWIKGWARLQGEGR 123 + G A+LG+++ ELDL M Q+ ++V LT G+EFLF+K+KV+W+KG+A G+ Sbjct: 66 ASGALAKLGVKLGKVELDLDAMHAQRLDAVKGLTGGIEFLFKKNKVEWLKGYATFTGKDS 125 Query: 124 VGVALADGGHAQLEARDIVIATGSEPAPLPGVPVDNQRILDSTGALELAEVPRHLVVIGA 183 V V G ++ A++IVIATGS PLPGV +D + ++DSTGALELA+VP HLVVIG Sbjct: 126 VKV-----GDREVRAKNIVIATGSSVTPLPGVEIDQKIVVDSTGALELAKVPEHLVVIGG 180 Query: 184 GVIGLELGSVWRRLGAQVTVLEYLERICPGLDGETARTLQRALTRQGMRFRLGTRV--VA 241 GVIGLELGSVWRR+GA+VTV+EYL++I PG D + + R +QG+ F+ GT+V VA Sbjct: 181 GVIGLELGSVWRRVGAKVTVVEYLDQILPGFDADVRKEAARLFKKQGIEFKTGTKVTGVA 240 Query: 242 ARSGEQGVELDLQPAAGGATESLQADYVLVAIGRRPYTEGLGLETVGLASDRRGMLE-NQ 300 + G+ + ++PAAGGA E+++AD VLVAIGR+P T+GLGL+ GL ++RG +E + Sbjct: 241 VKGGK--ATITVEPAAGGAAETIEADNVLVAIGRKPNTDGLGLDAAGLTVNQRGQIETDH 298 Query: 301 GQRSAAPGVWVIGDVTSGPMLAHKAEEEAIVCIERIAGHAAEMNAEVIPSVIYTQPEVAS 360 +++ PG+W IGDV GPMLAHKAE+E I E IAG +N +VIPSV+YT PE+A Sbjct: 299 SFKTSVPGIWAIGDVIPGPMLAHKAEDEGIAVAENIAGLTGIVNHDVIPSVVYTMPEIAG 358 Query: 361 VGLGEEQLQAARREYKVGRFPFSANSRAKINHESEGFIKILSDARSDQVLGVHMIGPGVS 420 VGL EE + A+ E KVG+FP + NSRAK NHE +GF+K+++DA++D+VLGV +I Sbjct: 359 VGLTEEAAK-AKGEVKVGKFPMAGNSRAKTNHEPDGFVKVIADAKTDRVLGVWIITSVAG 417 Query: 421 EMIGEACVAMEFSASAEDLALTCHPHPTRSEALRQAAMDVHGR 463 MI +A AMEF A++ED+A TCH HPT SEA+++AAM V G+ Sbjct: 418 TMIAQAAQAMEFGATSEDIAYTCHAHPTHSEAIKEAAMAVTGK 460 Lambda K H 0.318 0.135 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 689 Number of extensions: 29 Number of successful extensions: 5 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 467 Length of database: 464 Length adjustment: 33 Effective length of query: 434 Effective length of database: 431 Effective search space: 187054 Effective search space used: 187054 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 51 (24.3 bits)
Align candidate Ga0059261_1343 Ga0059261_1343 (dihydrolipoamide dehydrogenase (EC 1.8.1.4))
to HMM TIGR01350 (lpdA: dihydrolipoyl dehydrogenase (EC 1.8.1.4))
../bin/blast/fastacmd -i /tmp/list.4414.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.4414.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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