Align Glucokinase; EC 2.7.1.2; Glucose kinase (uncharacterized)
to candidate Ga0059261_0355 Ga0059261_0355 glucokinase, proteobacterial type
Query= curated2:P21908 (324 letters) >FitnessBrowser__Korea:Ga0059261_0355 Length = 323 Score = 407 bits (1045), Expect = e-118 Identities = 199/323 (61%), Positives = 248/323 (76%), Gaps = 1/323 (0%) Query: 1 MEIVAIDIGGTHARFSIAEVSNGRVLSLGEETTFKTAEHASLQLAWERFGEKLGRPLPRA 60 +E+VA+DIGGTHARF+IAEV GRV+S+GE T KTAEH S QLAW+ LGR +PRA Sbjct: 1 VEVVAVDIGGTHARFAIAEVEGGRVVSIGEPVTQKTAEHGSFQLAWQASARALGREMPRA 60 Query: 61 AAIAWAGPVHGEVLKLTNNPWVLRPATLNEKLDIDTHVLINDFGAVAHAVAHMDSSYLDH 120 AAIA A P++ E++KLTNNPW++RP + E+L++D++ LINDFGAV HAVA + S + H Sbjct: 61 AAIAIASPINDELIKLTNNPWIIRPPLIKERLEVDSYSLINDFGAVGHAVAQLPSEHFLH 120 Query: 121 ICGPDEALPSDGVITILGPGTGLGVAHLLRTEG-RYFVIETEGGHIDFAPLDRLEDKILA 179 ICGPD G IT+ GPGTGLGVA + RT Y VI TEGGH+DFAPLD +ED I+ Sbjct: 121 ICGPDAPFAEKGAITVCGPGTGLGVAQVFRTGPLSYHVISTEGGHMDFAPLDGIEDSIVK 180 Query: 180 RLRERFRRVSIERIISGPGLGNIYEALAAIEGVPFSLLDDIKLWQMALEGKDNLAEAALD 239 RLR + RVS ERI++GPG+ IYE LA IEG L+D ++W +A EGKD+LA AALD Sbjct: 181 RLRSTYTRVSAERIVAGPGIVPIYETLAEIEGKRTHRLNDKEIWTLAFEGKDSLAMAALD 240 Query: 240 RFCLSLGAIAGDLALAQGATSVVIGGGVGLRIASHLPESGFRQRFVSKGRFERVMSKIPV 299 RFCLSLGA+AGDLALA G T VVI GG+GL++ HL SGF QRF++KGRF+ +MS IPV Sbjct: 241 RFCLSLGAVAGDLALAHGPTGVVIAGGLGLKLKDHLVNSGFGQRFIAKGRFQALMSSIPV 300 Query: 300 KLITYPQPGLLGAAAAYANKYSE 322 KLIT+PQPGL GAAAAYA ++++ Sbjct: 301 KLITHPQPGLYGAAAAYAQEHTQ 323 Lambda K H 0.320 0.139 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 431 Number of extensions: 17 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 324 Length of database: 323 Length adjustment: 28 Effective length of query: 296 Effective length of database: 295 Effective search space: 87320 Effective search space used: 87320 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 48 (23.1 bits)
Align candidate Ga0059261_0355 Ga0059261_0355 (glucokinase, proteobacterial type)
to HMM TIGR00749 (glk: glucokinase (EC 2.7.1.2))
../bin/blast/fastacmd -i /tmp/list.13205.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.13205.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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