Align Homogentisate 1,2-dioxygenase; HGDO; Homogentisate oxygenase; Homogentisic acid oxidase; Homogentisicase; EC 1.13.11.5 (characterized)
to candidate Ga0059261_1694 Ga0059261_1694 homogentisate 1,2-dioxygenase (EC 1.13.11.5)
Query= SwissProt::Q9X4F5 (453 letters) >FitnessBrowser__Korea:Ga0059261_1694 Length = 441 Score = 644 bits (1660), Expect = 0.0 Identities = 296/437 (67%), Positives = 349/437 (79%), Gaps = 2/437 (0%) Query: 13 SGQQRAAGYMPGFGNDFETESLPGALPQGQNSPQKCNYGLYAEQLSGSPFTAPRGTNERS 72 S +A GYMPGFGNDFETE+LPGALPQGQNSPQKC YGLYAEQLSG+ FTAPRG NERS Sbjct: 3 SHNMQAVGYMPGFGNDFETEALPGALPQGQNSPQKCPYGLYAEQLSGTAFTAPRGQNERS 62 Query: 73 WLYRIRPSVRHTGRFRRVDYPHWKTAPHVGEHSLALGQLRWSPLPAPSEALDFLQGIRTM 132 W YRIRPSVRH GRF ++ PHWK+AP++ +LGQ RW+P+P + L +L G+RT+ Sbjct: 63 WCYRIRPSVRHVGRFAAIELPHWKSAPNIVPGVASLGQYRWNPVPHGAGELTWLTGMRTV 122 Query: 133 TTAGDALTQAGMAAHAYAFNADMVDDYFFNADGELLIVPETGAIQVFTELGRMDVEPSEI 192 TTAGD TQ GMA+H Y A MVD YF++ADGELL+VP+ G ++ TELG +++ P EI Sbjct: 123 TTAGDVNTQTGMASHVYLVTASMVDSYFYSADGELLVVPQEGRLRFCTELGVIEIAPGEI 182 Query: 193 CLIPRGMMFKVTRLGEEKVWRGYICENYGAKFTLPDRGPIGANCLANPRDFKTPVAAYED 252 ++PRG++++V + + RG++CENYG F LPDRGPIGANC+ANPRDFKTPVAA+ED Sbjct: 183 AVLPRGLVYRVEVI--DGPCRGFVCENYGQPFALPDRGPIGANCMANPRDFKTPVAAFED 240 Query: 253 KETPCRVQVKWCGSFHMVEIGHSPLDVVAWHGNYAPYKYDLKTFSPVGAILFDHPDPSIF 312 +ETP + +KWCG FH I HSPLDVVAWHGNYAPYKYDL T+SPVGAILFDHPDPSIF Sbjct: 241 RETPSTLTIKWCGQFHQSAIPHSPLDVVAWHGNYAPYKYDLSTYSPVGAILFDHPDPSIF 300 Query: 313 TVLTAPSGEEGTANVDFVIFPPRWLVAEHTFRPPWYHRNIMSEFMGLIYGRYDAKEEGFV 372 TVLTA S GTAN+DFV+F RWLVAEH+FRPPWYH+N+MSE MG IYG YDAK +GF Sbjct: 301 TVLTARSEIPGTANIDFVLFRERWLVAEHSFRPPWYHKNVMSELMGNIYGEYDAKPDGFA 360 Query: 373 PGGMSLHNMMLAHGPDFSGFEKASNGELKPVKLDNTMAFMFETRFPQQLTTFAAELDTLQ 432 PGGMSLHN ML HGPD + FEKASN LKP KLD TM+FMFETRFPQ LT +AA LQ Sbjct: 361 PGGMSLHNCMLPHGPDRNAFEKASNAALKPEKLDKTMSFMFETRFPQHLTDWAAREAPLQ 420 Query: 433 DDYMDCWSGLERKFDGT 449 DY DCW GL++KFDG+ Sbjct: 421 SDYADCWDGLDKKFDGS 437 Lambda K H 0.320 0.138 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 829 Number of extensions: 37 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 453 Length of database: 441 Length adjustment: 33 Effective length of query: 420 Effective length of database: 408 Effective search space: 171360 Effective search space used: 171360 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 51 (24.3 bits)
Align candidate Ga0059261_1694 Ga0059261_1694 (homogentisate 1,2-dioxygenase (EC 1.13.11.5))
to HMM TIGR01015 (hmgA: homogentisate 1,2-dioxygenase (EC 1.13.11.5))
../bin/blast/fastacmd -i /tmp/list.19203.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.19203.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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