Align Ethylmalonyl-CoA/methylmalonyl-CoA epimerase; EC 5.1.99.-; EC 5.1.99.1 (characterized)
to candidate Ga0059261_3985 Ga0059261_3985 methylmalonyl-CoA epimerase (EC 5.1.99.1)
Query= SwissProt::Q3IZP4 (134 letters) >FitnessBrowser__Korea:Ga0059261_3985 Length = 141 Score = 150 bits (379), Expect = 7e-42 Identities = 72/131 (54%), Positives = 93/131 (70%), Gaps = 3/131 (2%) Query: 2 IGRLNHVAIAVPDLEAAAAQYRNTLGAE-VGAPQDEPDHGVTVIFITLPNTKIELLHPLG 60 +GRLNH+ +A P +EA+ A YR+ +GA+ + AP D P GV V F+ PNT+IEL+ PLG Sbjct: 4 LGRLNHIGVATPSIEASVAFYRDVMGAQTIHAPFDLPAQGVKVCFVDTPNTQIELIEPLG 63 Query: 61 EGSPIAGFLEKNPAGGIHHICYEVEDILAARDRLKEAGARVLGSGEPKIGAHGKPVLFLH 120 SPI GFL +NPAGG HH+CYEV DI A+ + GA+VL GEP+IGAHG P+ F+H Sbjct: 64 ADSPIHGFLARNPAGGQHHVCYEVPDIHEAKAWFEAKGAKVL--GEPRIGAHGTPIFFVH 121 Query: 121 PKDFNGCLVEL 131 PKD G L E+ Sbjct: 122 PKDMGGVLTEI 132 Lambda K H 0.319 0.141 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 107 Number of extensions: 9 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 134 Length of database: 141 Length adjustment: 15 Effective length of query: 119 Effective length of database: 126 Effective search space: 14994 Effective search space used: 14994 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 42 (20.8 bits)
Align candidate Ga0059261_3985 Ga0059261_3985 (methylmalonyl-CoA epimerase (EC 5.1.99.1))
to HMM TIGR03081 (mce: methylmalonyl-CoA epimerase (EC 5.1.99.1))
../bin/blast/fastacmd -i /tmp/list.6058.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.6058.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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