Align Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27) (characterized)
to candidate Ga0059261_3677 Ga0059261_3677 methylmalonic acid semialdehyde dehydrogenase
Query= reanno::Caulo:CCNA_01360 (500 letters) >FitnessBrowser__Korea:Ga0059261_3677 Length = 503 Score = 775 bits (2002), Expect = 0.0 Identities = 384/498 (77%), Positives = 427/498 (85%) Query: 2 MRDIPHFIGGQKVDGASGRFGEVFDPNTGKVQARVALASAGELNTAIANAKVAQAAWAAT 61 +R+I HFIG G R +VFDPNTG VQA+V L + +L+ A+ANA AQ +WAAT Sbjct: 5 VREISHFIGNAATAGTGTRRSDVFDPNTGAVQAQVTLGAQADLDAAMANAVRAQISWAAT 64 Query: 62 NPQRRARVMFEFKRLLEVHMDELAALLSSEHGKVIADSKGDIQRGLEVIEFACGVPHLLK 121 NPQRRARVMF FK L+E +M+ELA LLSSEHGKVIAD+KGDIQRGLEVIEF CG+PH+LK Sbjct: 65 NPQRRARVMFNFKALIEKNMEELAHLLSSEHGKVIADAKGDIQRGLEVIEFVCGIPHVLK 124 Query: 122 GEYTQGAGPGIDVYSMRQPLGVVAGITPFNFPAMIPMWMFGPAIATGNAFILKPSERDPS 181 GEYTQGAGPGIDVYSMRQPLGVVAGITPFNFPAMIPMWMFG AIA GNAFILKPSERDPS Sbjct: 125 GEYTQGAGPGIDVYSMRQPLGVVAGITPFNFPAMIPMWMFGVAIACGNAFILKPSERDPS 184 Query: 182 VPVRLAELMIEAGLPPGVLNVVHGDKDCVEAILDHPDIKAVSFVGSSDIAQSVFQRAGAA 241 VPVRLAELM+EAGLP GVL VV GDK+ V+AILDHP+IKAVSFVGSSDIA V++R AA Sbjct: 185 VPVRLAELMLEAGLPEGVLQVVQGDKEMVDAILDHPEIKAVSFVGSSDIAHYVYRRGVAA 244 Query: 242 GKRVQAMGGAKNHGLVMPDADLDQAVADIIGAAYGSAGERCMALPVVVPVGEKTATALRE 301 GKRVQAMGGAKNHG+VMPDADLDQ V D+ GAA+GSAGERCMALPVVVPVG+KTA ALR Sbjct: 245 GKRVQAMGGAKNHGIVMPDADLDQVVNDLAGAAFGSAGERCMALPVVVPVGDKTADALRA 304 Query: 302 KLVAAIGGLRVGVSTDPDAHYGPVVSAAHKARIESYIQMGVDEGAELVVDGRGFSLQGHE 361 KL+ AI LRVGVSTD AHYGPVV+AAHKA+IESYIQMGVDEGAELVVDGRGF+LQGHE Sbjct: 305 KLLPAIEALRVGVSTDAGAHYGPVVTAAHKAKIESYIQMGVDEGAELVVDGRGFTLQGHE 364 Query: 362 EGFFVGPTLFDHVKPTSRSYHDEIFGPVLQMVRAESLEEGIALASRHQYGNGVAIFTRNG 421 +GFFVGPTLFD V P +SY +EIFGPVLQ+VRA E + L S HQYGNGVAIFTRNG Sbjct: 365 QGFFVGPTLFDRVTPQMQSYQEEIFGPVLQIVRAPDFETALRLPSEHQYGNGVAIFTRNG 424 Query: 422 DAAREFADQVEVGMVGINVPIPVPVAYHSFGGWKRSGFGDLNQYGMDGVRFYTRTKTVTQ 481 AAREFA +V VGMVGINVPIPVPVAYH+FGGWKRS FGD NQ+GM+G++F+T+ KTVTQ Sbjct: 425 HAAREFAARVNVGMVGINVPIPVPVAYHTFGGWKRSAFGDTNQHGMEGIKFFTKVKTVTQ 484 Query: 482 RWPKGGAVLDQSFVIPTM 499 RWP G +FVIPTM Sbjct: 485 RWPDGSPDGGNAFVIPTM 502 Lambda K H 0.320 0.137 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 908 Number of extensions: 30 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 500 Length of database: 503 Length adjustment: 34 Effective length of query: 466 Effective length of database: 469 Effective search space: 218554 Effective search space used: 218554 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 52 (24.6 bits)
Align candidate Ga0059261_3677 Ga0059261_3677 (methylmalonic acid semialdehyde dehydrogenase)
to HMM TIGR01722 (mmsA: methylmalonate-semialdehyde dehydrogenase (acylating) (EC 1.2.1.27))
../bin/blast/fastacmd -i /tmp/list.4901.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.4901.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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