Align Beta-ketoadipate enol-lactone hydrolase (EC 3.1.1.24) (characterized)
to candidate BWI76_RS16125 BWI76_RS16125 3-oxoadipate enol-lactonase
Query= reanno::pseudo3_N2E3:AO353_17230 (266 letters) >FitnessBrowser__Koxy:BWI76_RS16125 Length = 255 Score = 224 bits (570), Expect = 2e-63 Identities = 118/252 (46%), Positives = 156/252 (61%), Gaps = 4/252 (1%) Query: 13 YQLDGPEHAPVLVLSNSLGTNLHMWDVQIPAFTKHFRVLRFDTRGHGRSLVTPGPYSIEQ 72 YQ+DGP+ APV+VLSNSLGT MW Q+ A T+HFRVLR+DT GHG + G ++ Q Sbjct: 5 YQIDGPQDAPVIVLSNSLGTTRAMWQPQLEALTQHFRVLRYDTHGHGATRKN-GKVTLAQ 63 Query: 73 LGRDVLALLDALNIERAHFCGLSMGGLIGQWLGINAGERLHKLVVCNTAAKIGDPSVWNP 132 LG DV+ALLD LNI +A FCG+SMGGL G WLG A ER + LVV NTAA+IGD + W Sbjct: 64 LGEDVVALLDHLNIAKAWFCGISMGGLTGLWLGRFAPERFYGLVVANTAARIGDQASWLS 123 Query: 133 RIETVLRDGPAAMVALRDASIARWFTPDFAQANPAVAKQITDMLAATSPQGYAANCAAVR 192 R V ++G + A + RWFT F Q P V + L +GYAA C A+ Sbjct: 124 RARAVRQEGMDVVAA---GAADRWFTHAFRQKTPEVVAALCHQLTHIDAEGYAACCEALA 180 Query: 193 DADFREQLASITVPTLVIAGTEDAVTPPSGGRFIQERVRGAEYAEFYAAHLSNVQAGSAF 252 AD R ++A I +P L++AG D VT + F+ +++ +E A+HLSN++A AF Sbjct: 181 AADLRAEVAQIPIPVLIVAGESDPVTTVADADFLHQQIPVSEVVVLAASHLSNIEAPKAF 240 Query: 253 SDRVLSFLLAEK 264 S +L F+ EK Sbjct: 241 SSALLGFVQGEK 252 Lambda K H 0.321 0.136 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 197 Number of extensions: 6 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 266 Length of database: 255 Length adjustment: 24 Effective length of query: 242 Effective length of database: 231 Effective search space: 55902 Effective search space used: 55902 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 47 (22.7 bits)
Align candidate BWI76_RS16125 BWI76_RS16125 (3-oxoadipate enol-lactonase)
to HMM TIGR02427 (pcaD: 3-oxoadipate enol-lactonase (EC 3.1.1.24))
../bin/blast/fastacmd -i /tmp/list.27657.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.27657.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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