Align L-lactate dehydrogenase 1; L-LDH 1; EC 1.1.1.27 (characterized)
to candidate BWI76_RS15220 BWI76_RS15220 L-lactate dehydrogenase
Query= SwissProt::A6QDL6 (317 letters) >FitnessBrowser__Koxy:BWI76_RS15220 Length = 314 Score = 251 bits (640), Expect = 2e-71 Identities = 124/308 (40%), Positives = 190/308 (61%), Gaps = 1/308 (0%) Query: 5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRV 64 K KV++IG G VG+S A++L+NQS+ +EL+++DL+ + DL A Y P + + Sbjct: 4 KARKVMIIGAGNVGASAAYALLNQSVCEELILVDLNKPRAEAHAQDLSDAAAYMPGMMTI 63 Query: 65 KAGEYSDCHDADLVVIC-AGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVAT 123 E SDC D D+ VI +G A KPG+TRLD ++ KI KS+V ++M F+GIFLVAT Sbjct: 64 STREASDCADVDIAVITVSGGALKPGQTRLDELTNTAKIVKSLVPQMMNGGFNGIFLVAT 123 Query: 124 NPVDILAYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQIIGEHGDTE 183 NP DI+ + W+ SGLP+ +V+G+G LD+ R R +L++A D+ +S+DA I+GEHGD + Sbjct: 124 NPCDIITWQVWQLSGLPRGQVLGTGVWLDTTRLRRVLAQALDIGAQSIDAFILGEHGDAQ 183 Query: 184 LPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQAKGATYYGVAMGLARI 243 PVWSH+ + G + + ++ + I + R ++I KG T YGVA +A I Sbjct: 184 FPVWSHSAVYGSAIADVYQKHTGKALDRDLIADKVRKLGFEIYAGKGCTEYGVAGTIAEI 243 Query: 244 TEAIFRNEDAVLTVSALLEGEYEEEDVYIGVPAVINRNGIRNVVEIPLNDEEQSKFAHSA 303 IF L VS +L+GEY GVPAV+ ++G++ ++E+ L D+E KF H+ Sbjct: 244 CRNIFTGSHRALAVSCILDGEYGVTGAAAGVPAVLTQSGVQQIIELQLADDEAEKFRHAI 303 Query: 304 KTLKDIMA 311 + +K +A Sbjct: 304 EVIKASIA 311 Lambda K H 0.317 0.135 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 265 Number of extensions: 7 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 317 Length of database: 314 Length adjustment: 27 Effective length of query: 290 Effective length of database: 287 Effective search space: 83230 Effective search space used: 83230 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 48 (23.1 bits)
Align candidate BWI76_RS15220 BWI76_RS15220 (L-lactate dehydrogenase)
to HMM TIGR01771 (L-lactate dehydrogenase (EC 1.1.1.27))
../bin/blast/fastacmd -i /tmp/list.31010.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.31010.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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