GapMind for catabolism of small carbon sources

 

Alignments for a candidate for nagA in Klebsiella michiganensis M5al

Align N-acetylglucosamine 6-phosphate deacetylase (NagA;b0677) (EC 3.5.1.25) (characterized)
to candidate BWI76_RS08210 BWI76_RS08210 N-acetylglucosamine-6-phosphate deacetylase

Query= CAZy::AAC73771.1
         (382 letters)



>FitnessBrowser__Koxy:BWI76_RS08210
          Length = 382

 Score =  679 bits (1752), Expect = 0.0
 Identities = 331/382 (86%), Positives = 360/382 (94%)

Query: 1   MYALTQGRIFTGHEFLDDHAVVIADGLIKSVCPVAELPPEIEQRSLNGAILSPGFIDVQL 60
           MYALTQGRI+TGHE LDDHA+VIA+GLI+ +CP  ELP  IEQRS+NGAIL+PGFIDVQL
Sbjct: 1   MYALTQGRIYTGHEILDDHAIVIANGLIERICPQTELPTGIEQRSVNGAILAPGFIDVQL 60

Query: 61  NGCGGVQFNDTAEAVSVETLEIMQKANEKSGCTNYLPTLITTSDELMKQGVRVMREYLAK 120
           NGCGGVQFNDTA+AV+VETLEIMQKANE+SGCT+YLPTLIT SD+LMKQGVRVMREYL K
Sbjct: 61  NGCGGVQFNDTADAVTVETLEIMQKANERSGCTSYLPTLITASDDLMKQGVRVMREYLQK 120

Query: 121 HPNQALGLHLEGPWLNLVKKGTHNPNFVRKPDAALVDFLCENADVITKVTLAPEMVPAEV 180
           HPNQALGLHLEGPWLN+VKKGTHNP++VRKPDAALVDFLCENADVITK+TLAPE V  +V
Sbjct: 121 HPNQALGLHLEGPWLNIVKKGTHNPDYVRKPDAALVDFLCENADVITKITLAPERVEPDV 180

Query: 181 ISKLANAGIVVSAGHSNATLKEAKAGFRAGITFATHLYNAMPYITGREPGLAGAILDEAD 240
           I KL  AGI+VSAGHSNATLKEAK GFRAGITFATHL+NAMPYITGREPGLAGAI DE D
Sbjct: 181 IRKLVAAGIIVSAGHSNATLKEAKIGFRAGITFATHLFNAMPYITGREPGLAGAIFDEPD 240

Query: 241 IYCGIIADGLHVDYANIRNAKRLKGDKLCLVTDATAPAGANIEQFIFAGKTIYYRNGLCV 300
           +YCGII DG+HVDYAN+R AKRLKGDKLCLVTDATAPAGANIEQFIFAGKTIYYRNGLCV
Sbjct: 241 VYCGIIVDGMHVDYANVRLAKRLKGDKLCLVTDATAPAGANIEQFIFAGKTIYYRNGLCV 300

Query: 301 DENGTLSGSSLTMIEGVRNLVEHCGIALDEVLRMATLYPARAIGVEKRLGTLAAGKVANL 360
           DENGTLSGSSLTMIEGVRNLVEHCGIALDEVLRMATLYP+RAIGV+K+LG++A G VANL
Sbjct: 301 DENGTLSGSSLTMIEGVRNLVEHCGIALDEVLRMATLYPSRAIGVDKQLGSIAPGMVANL 360

Query: 361 TAFTPDFKITKTIVNGNEVVTQ 382
           TAFT D+KITKTIVNGNEVVT+
Sbjct: 361 TAFTRDYKITKTIVNGNEVVTE 382


Lambda     K      H
   0.319    0.136    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 617
Number of extensions: 9
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 382
Length adjustment: 30
Effective length of query: 352
Effective length of database: 352
Effective search space:   123904
Effective search space used:   123904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate BWI76_RS08210 BWI76_RS08210 (N-acetylglucosamine-6-phosphate deacetylase)
to HMM TIGR00221 (nagA: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25))

Software error:

../bin/blast/fastacmd -i /tmp/list.14170.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.14170.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.