GapMind for catabolism of small carbon sources

 

Alignments for a candidate for pta in Klebsiella michiganensis M5al

Align phosphate acetyltransferase (EC 2.3.1.8) (characterized)
to candidate BWI76_RS20240 BWI76_RS20240 phosphate acetyltransferase

Query= BRENDA::Q8ZND6
         (714 letters)



>FitnessBrowser__Koxy:BWI76_RS20240
          Length = 714

 Score = 1338 bits (3462), Expect = 0.0
 Identities = 689/713 (96%), Positives = 703/713 (98%)

Query: 1   MSRIIMLIPTGTSVGLTSVSLGVIRAMERKGVRLSVFKPIAQPRAGGDAPDQTTTIVRAN 60
           MSR IMLIPTGTSVGLTSVSLGVIRAMERKGVRLSVFKPIAQPRAGGDAPDQTTTI+RAN
Sbjct: 1   MSRTIMLIPTGTSVGLTSVSLGVIRAMERKGVRLSVFKPIAQPRAGGDAPDQTTTIIRAN 60

Query: 61  STLPAAEPLKMSHVESLLSSNQKDVLMEEIIANYHANTKDAEVVLVEGLVPTRKHQFAQS 120
           S LPAAEPLKMSHVESLLSSNQKDVLMEEIIANYHANT+DAEVVLVEGLVPTRKHQFAQS
Sbjct: 61  SDLPAAEPLKMSHVESLLSSNQKDVLMEEIIANYHANTQDAEVVLVEGLVPTRKHQFAQS 120

Query: 121 LNYEIAKTLNAEIVFVMSQGTDTPEQLNERIELTRSSFGGAKNTNITGVIINKLNAPVDE 180
           LNYEIAKTLNAEIVFVMSQGTDTPEQL ERIELTRSSFGGAKNT+ITGVI+NKLNAPVDE
Sbjct: 121 LNYEIAKTLNAEIVFVMSQGTDTPEQLKERIELTRSSFGGAKNTSITGVIVNKLNAPVDE 180

Query: 181 QGRTRPDLSEIFDDSSKAQVIKIDPAKLQESSPLPVLGAVPWSFDLIATRAIDMARHLNA 240
           QGRTRPDLSEIFDDSSKA+V+KIDPA+LQ+ SPLPVLGAVPWSFDLIATRAIDMA HLNA
Sbjct: 181 QGRTRPDLSEIFDDSSKAKVVKIDPAQLQDGSPLPVLGAVPWSFDLIATRAIDMAHHLNA 240

Query: 241 TIINEGDIKTRRVKSVTFCARSIPHMLEHFRAGSLLVTSADRPDVLVAACLAAMNGVEIG 300
           TIINEGDI TRRVKSVTFCARSIPHMLEHFRAGSLLVTSADRPDVLVAACLAAMNGVEIG
Sbjct: 241 TIINEGDINTRRVKSVTFCARSIPHMLEHFRAGSLLVTSADRPDVLVAACLAAMNGVEIG 300

Query: 301 ALLLTGGYEMDARISKLCERAFATGLPVFMVNTNTWQTSLSLQSFNLEVPVDDHERIEKV 360
           A+LLTG YEMD R+SKLCERAFATGLPVFMVNTNTWQTSLSLQSFNLEVPVDDHERIEKV
Sbjct: 301 AILLTGAYEMDPRVSKLCERAFATGLPVFMVNTNTWQTSLSLQSFNLEVPVDDHERIEKV 360

Query: 361 QEYVANYVNAEWIESLTATSERSRRLSPPAFRYQLTELARKAGKRVVLPEGDEPRTVKAA 420
           QEYVANY+NA+WIESLTATSERSRRLSPPAFRYQLTELARKAGKRVVLPEG+EPRTVKAA
Sbjct: 361 QEYVANYINADWIESLTATSERSRRLSPPAFRYQLTELARKAGKRVVLPEGNEPRTVKAA 420

Query: 421 AICAERGIATCVLLGNPDEINRVAASQGVELGAGIEIVDPEVVRESYVARLVELRKSKGM 480
           AICAERGIATCVLLGNPDEI RVAASQGVELGAGIEIVDPEVVRESYVARLVELRKSKGM
Sbjct: 421 AICAERGIATCVLLGNPDEITRVAASQGVELGAGIEIVDPEVVRESYVARLVELRKSKGM 480

Query: 481 TEPVAREQLEDNVVLGTLMLEQDEVDGLVSGAVHTTANTIRPPLQLIKTAPGSSLVSSVF 540
           TE VAREQLEDNVVLGTLMLEQDEVDGLVSGAVHTTANTIRPPLQLIKTAPGSSLVSSVF
Sbjct: 481 TEAVAREQLEDNVVLGTLMLEQDEVDGLVSGAVHTTANTIRPPLQLIKTAPGSSLVSSVF 540

Query: 541 FMLLPEQVYVYGDCAINPDPTAEQLAEIAIQSADSAIAFGIEPRVAMLSYSTGTSGAGSD 600
           FMLLPEQVYVYGDCAINPDPTAEQLAEIAIQSADSAIAFGIEPRVAMLSYSTGTSGAGSD
Sbjct: 541 FMLLPEQVYVYGDCAINPDPTAEQLAEIAIQSADSAIAFGIEPRVAMLSYSTGTSGAGSD 600

Query: 601 VEKVREATRLAQEKRPDLMIDGPLQYDAAVMADVAKSKAPNSPVAGRATVFIFPDLNTGN 660
           VEKVREATRLAQEKRPDLMIDGPLQYDAAVMADVAKSKAPNSPVAGRATVFIFPDLNTGN
Sbjct: 601 VEKVREATRLAQEKRPDLMIDGPLQYDAAVMADVAKSKAPNSPVAGRATVFIFPDLNTGN 660

Query: 661 TTYKAVQRSADLISIGPMLQGMRKPVNDLSRGALVDDIVYTIALTAIQASQQQ 713
           TTYKAVQRSADLISIGPMLQGMRKPVNDLSRGALVDDIVYTIALTAIQ+SQQQ
Sbjct: 661 TTYKAVQRSADLISIGPMLQGMRKPVNDLSRGALVDDIVYTIALTAIQSSQQQ 713


Lambda     K      H
   0.316    0.131    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1574
Number of extensions: 32
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 714
Length of database: 714
Length adjustment: 39
Effective length of query: 675
Effective length of database: 675
Effective search space:   455625
Effective search space used:   455625
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)

Align candidate BWI76_RS20240 BWI76_RS20240 (phosphate acetyltransferase)
to HMM TIGR00651 (pta: phosphate acetyltransferase (EC 2.3.1.8))

Software error:

../bin/blast/fastacmd -i /tmp/list.18623.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.18623.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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