Align ribulokinase; EC 2.7.1.16 (characterized)
to candidate BWI76_RS04590 BWI76_RS04590 ribulokinase
Query= CharProtDB::CH_002149 (566 letters) >FitnessBrowser__Koxy:BWI76_RS04590 Length = 569 Score = 1024 bits (2648), Expect = 0.0 Identities = 495/560 (88%), Positives = 523/560 (93%) Query: 1 MAIAIGLDFGSDSVRALAVDCATGEEIATSVEWYPRWQKGQFCDAPNNQFRHHPRDYIES 60 MAIAIGLDFGSDSVRALAV+CATGEE+A SVEWYPRWQ+G FCD PNNQFRHHPRDYIES Sbjct: 1 MAIAIGLDFGSDSVRALAVECATGEELAASVEWYPRWQEGLFCDGPNNQFRHHPRDYIES 60 Query: 61 MEAALKTVLAELSVEQRAAVVGIGVDSTGSTPAPIDADGNVLALRPEFAENPNAMFVLWK 120 MEAALK+VLA LS EQRAAVVGIGVDSTGSTPAPIDADGNVLALR EFA NPNAMFVLWK Sbjct: 61 MEAALKSVLASLSAEQRAAVVGIGVDSTGSTPAPIDADGNVLALRDEFASNPNAMFVLWK 120 Query: 121 DHTAVEEAEEITRLCHAPGNVDYSRYIGGIYSSEWFWAKILHVTRQDSAVAQSAASWIEL 180 DHT+VEEAEEITRLCH PG DYSRYIGGIYSSEWFWAKILHVTRQDSAVA++AASWIEL Sbjct: 121 DHTSVEEAEEITRLCHQPGKEDYSRYIGGIYSSEWFWAKILHVTRQDSAVAEAAASWIEL 180 Query: 181 CDWVPALLSGTTRPQDIRRGRCSAGHKSLWHESWGGLPPASFFDELDPILNRHLPSPLFT 240 CDWVPALLSGTTRPQDIRRGRCSAGHKSLWHESWGGLPPA FFDELDPI+N++L P+F+ Sbjct: 181 CDWVPALLSGTTRPQDIRRGRCSAGHKSLWHESWGGLPPAGFFDELDPIINQNLAYPMFS 240 Query: 241 DTWTADIPVGTLCPEWAQRLGLPESVVISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDI 300 +TWTAD+PVGTL EWA RLGLP++V ISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDI Sbjct: 241 ETWTADVPVGTLTAEWAARLGLPQTVAISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDI 300 Query: 301 LIADKQSVGERAVKGICGQVDGSVVPGFIGLEAGQSAFGDIYAWFGRVLGWPLEQLAAQH 360 LIADKQSVGER VKGICGQVDGSVVP FIG+EAGQSAFGDIYAWFGR+LGWPLEQLA H Sbjct: 301 LIADKQSVGERTVKGICGQVDGSVVPDFIGMEAGQSAFGDIYAWFGRILGWPLEQLAQAH 360 Query: 361 PELKTQINASQKQLLPALTEAWAKNPSLDHLPVVLDWFNGRRTPNANQRLKGVITDLNLA 420 PELK QI ASQKQLLPALT+AWAKNPSLDHLPVVLDWFNGRRTPNANQRLKGVITDLNLA Sbjct: 361 PELKEQIKASQKQLLPALTDAWAKNPSLDHLPVVLDWFNGRRTPNANQRLKGVITDLNLA 420 Query: 421 TDAPLLFGGLIAATAFGARAIMECFTDQGIAVNNVMALGGIARKNQVIMQACCDVLNRPL 480 TDAP LFGGLIAATAFGARAIMECFTDQGI VNNVMALGGIARKN VIMQACCDVLNRPL Sbjct: 421 TDAPALFGGLIAATAFGARAIMECFTDQGIPVNNVMALGGIARKNPVIMQACCDVLNRPL 480 Query: 481 QIVASDQCCALGAAIFAAVAAKVHADIPSAQQKMASAVEKTLQPCSEQAQRFEQLYRRYQ 540 QIVASDQCCALGAAIFAAVAA V+ DIP+AQ+ MAS VE TLQP QAQRFEQLY+RYQ Sbjct: 481 QIVASDQCCALGAAIFAAVAAGVYRDIPAAQENMASQVESTLQPRPAQAQRFEQLYQRYQ 540 Query: 541 QWAMSAEQHYLPTSAPAQAA 560 QW++SAEQ YLP++A A+ A Sbjct: 541 QWSLSAEQRYLPSTAKAETA 560 Lambda K H 0.320 0.133 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1185 Number of extensions: 39 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 566 Length of database: 569 Length adjustment: 36 Effective length of query: 530 Effective length of database: 533 Effective search space: 282490 Effective search space used: 282490 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 53 (25.0 bits)
Align candidate BWI76_RS04590 BWI76_RS04590 (ribulokinase)
to HMM TIGR01234 (araB: ribulokinase (EC 2.7.1.16))
../bin/blast/fastacmd -i /tmp/list.25567.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.25567.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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