Align L-ribulose-5-phosphate 4-epimerase SgbE; Phosphoribulose isomerase; EC 5.1.3.4 (characterized)
to candidate BWI76_RS27115 BWI76_RS27115 L-ribulose-5-phosphate 4-epimerase
Query= SwissProt::P37680 (231 letters) >FitnessBrowser__Koxy:BWI76_RS27115 Length = 232 Score = 441 bits (1134), Expect = e-129 Identities = 213/231 (92%), Positives = 223/231 (96%) Query: 1 MLEQLKADVLAANLALPAHHLVTFTWGNVSAVDETRQWMVIKPSGVEYDVMTADDMVVVE 60 MLEQLKA+VLAANLALPAH LVTFTWGNVSAVDETR+ MVIKPSGVEY+VMTADDMVVVE Sbjct: 1 MLEQLKAEVLAANLALPAHGLVTFTWGNVSAVDETRKLMVIKPSGVEYEVMTADDMVVVE 60 Query: 61 IASGKVVEGSKKPSSDTPTHLALYRRYAEIGGIVHTHSRHATIWSQAGLDLPAWGTTHAD 120 +ASGKVVEG KKPSSDTPTHLALYRRY +IGGIVHTHSRHATIWSQAGLDLPAWGTTHAD Sbjct: 61 MASGKVVEGGKKPSSDTPTHLALYRRYPQIGGIVHTHSRHATIWSQAGLDLPAWGTTHAD 120 Query: 121 YFYGAIPCTRQMTAEEINGEYEYQTGEVIIETFEERGRSPAQIPAVLVHSHGPFAWGKNA 180 YFYGAIPCTR+MT EEINGEYEYQTGEVII+TFE+RG PAQIPAVLVHSHGPFAWGK+A Sbjct: 121 YFYGAIPCTRRMTVEEINGEYEYQTGEVIIKTFEQRGLDPAQIPAVLVHSHGPFAWGKDA 180 Query: 181 ADAVHNAVVLEECAYMGLFSRQLAPQLPAMQNELLDKHYLRKHGANAYYGQ 231 ADAVHNAVVLEECAYMGLFSRQLAPQLP MQ+ELLDKHYLRKHGANAYYGQ Sbjct: 181 ADAVHNAVVLEECAYMGLFSRQLAPQLPDMQSELLDKHYLRKHGANAYYGQ 231 Lambda K H 0.318 0.132 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 337 Number of extensions: 8 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 231 Length of database: 232 Length adjustment: 23 Effective length of query: 208 Effective length of database: 209 Effective search space: 43472 Effective search space used: 43472 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 46 (22.3 bits)
Align candidate BWI76_RS27115 BWI76_RS27115 (L-ribulose-5-phosphate 4-epimerase)
to HMM TIGR00760 (araD: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4))
../bin/blast/fastacmd -i /tmp/list.20228.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.20228.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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