Align malate synthase A (EC 2.3.3.9) (characterized)
to candidate BWI76_RS01660 BWI76_RS01660 malate synthase A
Query= ecocyc::MALATE-SYNTHASE (533 letters) >FitnessBrowser__Koxy:BWI76_RS01660 Length = 533 Score = 990 bits (2559), Expect = 0.0 Identities = 481/533 (90%), Positives = 508/533 (95%) Query: 1 MTEQATTTDELAFTRPYGEQEKQILTAEAVEFLTELVTHFTPQRNKLLAARIQQQQDIDN 60 MT+QAT TDELAF++PYG+QEKQILT EAVEFLTELV+ FTP+RN+LLAARIQQQQ ID+ Sbjct: 1 MTQQATITDELAFSQPYGDQEKQILTPEAVEFLTELVSRFTPERNRLLAARIQQQQAIDD 60 Query: 61 GTLPDFISETASIRDADWKIRGIPADLEDRRVEITGPVERKMVINALNANVKVFMADFED 120 G LPDFISETASIR+++WKIRGIP DL+DRRVEITGPVERKMVINALNANVKVFMADFED Sbjct: 61 GKLPDFISETASIRNSEWKIRGIPEDLQDRRVEITGPVERKMVINALNANVKVFMADFED 120 Query: 121 SLAPDWNKVIDGQINLRDAVNGTISYTNEAGKIYQLKPNPAVLICRVRGLHLPEKHVTWR 180 SLAP+WNKVIDGQINLRDAVNGTISYTNEAGKIYQLKPNPA+LICRVRGLHLPEKHVTWR Sbjct: 121 SLAPEWNKVIDGQINLRDAVNGTISYTNEAGKIYQLKPNPALLICRVRGLHLPEKHVTWR 180 Query: 181 GEAIPGSLFDFALYFFHNYQALLAKGSGPYFYLPKTQSWQEAAWWSEVFSYAEDRFNLPR 240 GEAIPGSLFDFALYFFHNY+ALL KGSGPYFYLPKTQ+WQEAAWWSEVFS+ EDRF LPR Sbjct: 181 GEAIPGSLFDFALYFFHNYKALLEKGSGPYFYLPKTQAWQEAAWWSEVFSFTEDRFELPR 240 Query: 241 GTIKATLLIETLPAVFQMDEILHALRDHIVGLNCGRWDYIFSYIKTLKNYPDRVLPDRQA 300 GT+KATLLIETLPAVFQMDEILHALRDHIVGLNCGRWDYIFSYIKTLKN+PDRVLPDRQ Sbjct: 241 GTVKATLLIETLPAVFQMDEILHALRDHIVGLNCGRWDYIFSYIKTLKNHPDRVLPDRQV 300 Query: 301 VTMDKPFLNAYSRLLIKTCHKRGAFAMGGMAAFIPSKDEEHNNQVLNKVKADKSLEANNG 360 VTMDKPFL+AYSRLLIKTCHKRGAFAMGGMAAFIPSKD E NNQVLNKVKADKSLEANNG Sbjct: 301 VTMDKPFLSAYSRLLIKTCHKRGAFAMGGMAAFIPSKDAERNNQVLNKVKADKSLEANNG 360 Query: 361 HDGTWIAHPGLADTAMAVFNDILGSRKNQLEVMREQDAPITADQLLAPCDGERTEEGMRA 420 HDGTWIAHPGLADTAMAVFN +LG KNQL V RE DAPITA+QLLAPC+GERTEEGMRA Sbjct: 361 HDGTWIAHPGLADTAMAVFNGVLGENKNQLSVTREDDAPITAEQLLAPCEGERTEEGMRA 420 Query: 421 NIRVAVQYIEAWISGNGCVPIYGLMEDAATAEISRTSIWQWIHHQKTLSNGKPVTKALFR 480 NIRVAVQYIEAWISGNGCVPIYGLMEDAATAEISRTSIWQWIHH+KTLSNG PVTKALFR Sbjct: 421 NIRVAVQYIEAWISGNGCVPIYGLMEDAATAEISRTSIWQWIHHEKTLSNGTPVTKALFR 480 Query: 481 QMLGEEMKVIASELGEERFSQGRFDDAARLMEQITTSDELIDFLTLPGYRLLA 533 Q L EEM+VI ELGE R+S GRFD+AARLMEQITTSDELIDFLTLPGYRLLA Sbjct: 481 QWLAEEMRVIQDELGEHRYSSGRFDEAARLMEQITTSDELIDFLTLPGYRLLA 533 Lambda K H 0.320 0.135 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1035 Number of extensions: 30 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 533 Length of database: 533 Length adjustment: 35 Effective length of query: 498 Effective length of database: 498 Effective search space: 248004 Effective search space used: 248004 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 52 (24.6 bits)
Align candidate BWI76_RS01660 BWI76_RS01660 (malate synthase A)
to HMM TIGR01344 (aceB: malate synthase A (EC 2.3.3.9))
../bin/blast/fastacmd -i /tmp/list.31625.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.31625.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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