Align arginine decarboxylase (EC 4.1.1.19) (characterized)
to candidate BWI76_RS24030 BWI76_RS24030 arginine decarboxylase
Query= BRENDA::P21170 (658 letters) >FitnessBrowser__Koxy:BWI76_RS24030 Length = 658 Score = 1270 bits (3286), Expect = 0.0 Identities = 625/658 (94%), Positives = 637/658 (96%) Query: 1 MSDDMSMGLPSSAGEHGVLRSMQEVAMSSQEASKMLRTYNIAWWGNNYYDVNELGHISVC 60 MSDDMS+ PSSAG+HGVLRSMQEVAMSSQEASKMLRTYNIAWWGNNYYDVNELGHISVC Sbjct: 1 MSDDMSLSSPSSAGDHGVLRSMQEVAMSSQEASKMLRTYNIAWWGNNYYDVNELGHISVC 60 Query: 61 PDPDVPEARVDLAQLVKTREAQGQRLPALFCFPQILQHRLRSINAAFKRARESYGYNGDY 120 PDPDVPEARVDLA+LVK REAQGQRLPALFCFPQILQHRLRSINAAFKRARESYGYNGDY Sbjct: 61 PDPDVPEARVDLAELVKAREAQGQRLPALFCFPQILQHRLRSINAAFKRARESYGYNGDY 120 Query: 121 FLVYPIKVNQHRRVIESLIHSGEPLGLEAGSKAELMAVLAHAGMTRSVIVCNGYKDREYI 180 FLVYPIKVNQHRRVIESLIHSGEPLGLEAGSKAELMAVLAHAGMTRSVIVCNGYKDREYI Sbjct: 121 FLVYPIKVNQHRRVIESLIHSGEPLGLEAGSKAELMAVLAHAGMTRSVIVCNGYKDREYI 180 Query: 181 RLALIGEKMGHKVYLVIEKMSEIAIVLDEAERLNVVPRLGVRARLASQGSGKWQSSGGEK 240 RLAL+GEKMGHKVYLVIEKMSEIAIVL+EAERLNVVPRLGVRARLASQGSGKWQSSGGEK Sbjct: 181 RLALVGEKMGHKVYLVIEKMSEIAIVLEEAERLNVVPRLGVRARLASQGSGKWQSSGGEK 240 Query: 241 SKFGLAATQVLQLVETLREAGRLDSLQLLHFHLGSQMANIRDIATGVRESARFYVELHKL 300 SKFGLAATQVLQLVE LR AG LDSLQLLHFHLGSQMANIRDIATGVRES+RFYVELHKL Sbjct: 241 SKFGLAATQVLQLVEILRSAGHLDSLQLLHFHLGSQMANIRDIATGVRESSRFYVELHKL 300 Query: 301 GVNIQCFDVGGGLGVDYEGTRSQSDCSVNYGLNEYANNIIWAIGDACEENGLPHPTVITE 360 GVNIQCFDVGGGLGVDYEGTRSQSDCSVNYGLNEYANNIIWAIGDACEENGLPHPTVITE Sbjct: 301 GVNIQCFDVGGGLGVDYEGTRSQSDCSVNYGLNEYANNIIWAIGDACEENGLPHPTVITE 360 Query: 361 SGRAVTAHHTVLVSNIIGVERNEYTVPTAPAEDAPRALQSMWETWQEMHEPGTRRSLREW 420 SGRAVTAHHTVLVSNIIGVERNEYT T PAEDA R LQSMWETW EM E G RRSLREW Sbjct: 361 SGRAVTAHHTVLVSNIIGVERNEYTEATPPAEDAARPLQSMWETWLEMQETGNRRSLREW 420 Query: 421 LHDSQMDLHDIHIGYSSGIFSLQERAWAEQLYLSMCHEVQKQLDPQNRAHRPIIDELQER 480 LHDSQMDLHDIHIGYSSG F+LQERAWAEQLYL+MCHEVQKQLDP NRAHRPIIDELQER Sbjct: 421 LHDSQMDLHDIHIGYSSGTFNLQERAWAEQLYLNMCHEVQKQLDPSNRAHRPIIDELQER 480 Query: 481 MADKMYVNFSLFQSMPDAWGIDQLFPVLPLEGLDQVPERRAVLLDITCDSDGAIDHYIDG 540 MADK+YVNFSLFQSMPDAWGIDQLFPV+PLEGL+ VPERRAVLLDITCDSDGAIDHY+DG Sbjct: 481 MADKIYVNFSLFQSMPDAWGIDQLFPVMPLEGLNMVPERRAVLLDITCDSDGAIDHYVDG 540 Query: 541 DGIATTMPMPEYDPENPPMLGFFMVGAYQEILGNMHNLFGDTEAVDVFVFPDGSVEVELS 600 DGIATTMPMPEYDPENPPMLGFFMVGAYQEILGNMHNLFGDTEAVDVFVFPDGSVEVELS Sbjct: 541 DGIATTMPMPEYDPENPPMLGFFMVGAYQEILGNMHNLFGDTEAVDVFVFPDGSVEVELS 600 Query: 601 DEGDTVADMLQYVQLDPKTLLTQFRDQVKKTDLDAELQQQFLEEFEAGLYGYTYLEDE 658 DEGDTVADMLQYVQLDP TLLTQFRDQVK TDLDA LQQQFLEEFEAGLYGYTYLEDE Sbjct: 601 DEGDTVADMLQYVQLDPNTLLTQFRDQVKNTDLDAALQQQFLEEFEAGLYGYTYLEDE 658 Lambda K H 0.319 0.136 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1426 Number of extensions: 44 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 658 Length of database: 658 Length adjustment: 38 Effective length of query: 620 Effective length of database: 620 Effective search space: 384400 Effective search space used: 384400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 54 (25.4 bits)
Align candidate BWI76_RS24030 BWI76_RS24030 (arginine decarboxylase)
to HMM TIGR01273 (speA: arginine decarboxylase (EC 4.1.1.19))
../bin/blast/fastacmd -i /tmp/list.22079.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.22079.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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