Align Ornithine carbamoyltransferase subunit F; OTCase-2; EC 2.1.3.3 (characterized)
to candidate BWI76_RS03010 BWI76_RS03010 ornithine carbamoyltransferase
Query= SwissProt::P06960 (334 letters) >FitnessBrowser__Koxy:BWI76_RS03010 Length = 334 Score = 608 bits (1569), Expect = e-179 Identities = 299/334 (89%), Positives = 317/334 (94%) Query: 1 MSDLYKKHFLKLLDFTPAQFTSLLTLAAQLKADKKNGKEVQKLTGKNIALIFEKDSTRTR 60 MS Y+KHFLKLLDFTPA+ T+LL LAA+LKADKKN E+Q LTGKNIALIFEKDSTRTR Sbjct: 1 MSAFYQKHFLKLLDFTPAEITALLELAARLKADKKNNIEIQHLTGKNIALIFEKDSTRTR 60 Query: 61 CSFEVAAFDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGHGQEVVETLAQY 120 CSFEVAAFDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGHGQEVVETLA+Y Sbjct: 61 CSFEVAAFDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGHGQEVVETLAEY 120 Query: 121 AGVPVWNGLTNEFHPTQLLADLMTMQEHLPGKAFNEMTLVYAGDARNNMGNSMLEAAALT 180 AGVPVWNGLTNEFHPTQLLADL+TMQEHLPGKAFN+MTLVYAGDARNNMGNSMLEAAALT Sbjct: 121 AGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNQMTLVYAGDARNNMGNSMLEAAALT 180 Query: 181 GLDLRLLAPKACWPEESLVAECSALAEKHGGKITLTEDVAAGVKGADFIYTDVWVSMGEA 240 GLDLRL+AP ACWPEE LV +C ALA+K+GG ITLTED+AAGVKGADFIYTDVWVSMGEA Sbjct: 181 GLDLRLVAPTACWPEEKLVEQCRALAQKNGGNITLTEDIAAGVKGADFIYTDVWVSMGEA 240 Query: 241 KEKWAERIALLRGYQVNAQMMALTDNPNVKFLHCLPAFHDDQTTLGKQMAKEFDLHGGME 300 KEKWAERIALLR YQVN++MMALT NP VKFLHCLPAFHDDQTTLGKQMA E+ LHGGME Sbjct: 241 KEKWAERIALLRAYQVNSEMMALTGNPQVKFLHCLPAFHDDQTTLGKQMAAEYGLHGGME 300 Query: 301 VTDEVFESAASIVFDQAENRMHTIKAVMMATLGE 334 VTDEVFESAASIVFDQAENRMHTIKAVM+ATLG+ Sbjct: 301 VTDEVFESAASIVFDQAENRMHTIKAVMVATLGK 334 Lambda K H 0.318 0.132 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 486 Number of extensions: 12 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 334 Length of database: 334 Length adjustment: 28 Effective length of query: 306 Effective length of database: 306 Effective search space: 93636 Effective search space used: 93636 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 49 (23.5 bits)
Align candidate BWI76_RS03010 BWI76_RS03010 (ornithine carbamoyltransferase)
to HMM TIGR00658 (argF: ornithine carbamoyltransferase (EC 2.1.3.3))
../bin/blast/fastacmd -i /tmp/list.6623.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.6623.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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