Align Carbamate kinase; EC 2.7.2.2 (characterized, see rationale)
to candidate BWI76_RS07060 BWI76_RS07060 carbamate kinase
Query= uniprot:P13982 (310 letters) >FitnessBrowser__Koxy:BWI76_RS07060 Length = 297 Score = 270 bits (690), Expect = 3e-77 Identities = 150/298 (50%), Positives = 191/298 (64%), Gaps = 10/298 (3%) Query: 3 IVVALGGNALLRRGEPMTADNQRENVRIAAEQIAKVAPGNELVIAHGNGPQVGLLALQGA 62 +VVALGGNALL+RGE +T +NQ N+ A +A++A L I HGNGPQVGLL+LQ Sbjct: 4 LVVALGGNALLQRGEALTVENQYRNIDSAVPALARLAQKYRLAIVHGNGPQVGLLSLQNL 63 Query: 63 AYDKVSPYPLDVLGAETEGMIGYMIEQEMGN--LLPFEVPFATILTQVEVDGKDPAFQNP 120 AY V PYPLDVL AE++GMIGYM+ Q + L+P P +T++T++ V DPAF P Sbjct: 64 AYGDVEPYPLDVLVAESQGMIGYMLAQRLAQEALMP---PVSTVMTRIAVASNDPAFSAP 120 Query: 121 TKPIGPVYSREEAERLAAEKGWSIAPDGDKFRRVVPSPRPKRIFEIRPVKWLLEKGTIVI 180 K IGPVY E +L AE GW++ DG RRVVPSP P RI E ++ LL +G VI Sbjct: 121 EKFIGPVYEPELQAQLEAEYGWTMKRDGKYLRRVVPSPTPVRIEESESIERLLGEGHAVI 180 Query: 181 CAGGGGIPTMYDEAGKKLSGVEAVIDKDLCSSLLAQELVADILIIATDVDAAYVDWGKPT 240 C GGGGIP + E G+ G EAVIDKDL ++LLA+++ AD L+I TD DA Y WG P Sbjct: 181 CCGGGGIPVL--ECGR---GAEAVIDKDLAAALLAEQINADGLVILTDADAVYEHWGTPM 235 Query: 241 QKAIAQAHPDELERLGFAAGSMGPKVQAAIEFARATGKDAVIGSLADIVAITEGKAGT 298 Q+ I +A P+ L G+MGPK+ A + R GK A IG+L+ I G AGT Sbjct: 236 QRPIREATPEALAPFARNDGAMGPKIAAVSGYVRRRGKRAWIGALSRIDDTLAGLAGT 293 Lambda K H 0.317 0.136 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 269 Number of extensions: 14 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 310 Length of database: 297 Length adjustment: 27 Effective length of query: 283 Effective length of database: 270 Effective search space: 76410 Effective search space used: 76410 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 48 (23.1 bits)
Align candidate BWI76_RS07060 BWI76_RS07060 (carbamate kinase)
to HMM TIGR00746 (arcC: carbamate kinase (EC 2.7.2.2))
../bin/blast/fastacmd -i /tmp/list.21694.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.21694.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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