GapMind for catabolism of small carbon sources

 

Alignments for a candidate for astA in Klebsiella michiganensis M5al

Align Arginine N-succinyltransferase; AST; AOST; EC 2.3.1.109 (characterized)
to candidate BWI76_RS11675 BWI76_RS11675 arginine N-succinyltransferase

Query= SwissProt::P0AE37
         (344 letters)



>FitnessBrowser__Koxy:BWI76_RS11675
          Length = 344

 Score =  586 bits (1511), Expect = e-172
 Identities = 280/342 (81%), Positives = 312/342 (91%)

Query: 1   MMVIRPVERSDVSALMQLASKTGGGLTSLPANEATLSARIERAIKTWQGELPKSEQGYVF 60
           MMVIRPVE+ D+  L+ LA +TGGGLTSLPA+EATL+ARIER+  TW+GELPKSEQGYVF
Sbjct: 1   MMVIRPVEKGDLPGLLTLAGETGGGLTSLPADEATLAARIERSQMTWRGELPKSEQGYVF 60

Query: 61  VLEDSETGTVAGICAIEVAVGLNDPWYNYRVGTLVHASKELNVYNALPTLFLSNDHTGSS 120
           VLED  +G VAGICAIEVAVGLNDPWYNYRVGT VHASKELNVYNALPTLFLSNDHTGSS
Sbjct: 61  VLEDCASGAVAGICAIEVAVGLNDPWYNYRVGTQVHASKELNVYNALPTLFLSNDHTGSS 120

Query: 121 ELCTLFLDPDWRKEGNGYLLSKSRFMFMAAFRDKFNDKVVAEMRGVIDEHGYSPFWQSLG 180
           ELCTLFLDP WRKEGNGYLLSKSRF+FMAAFR++FN+KVVAEMRGVIDEHGYSPFW+SLG
Sbjct: 121 ELCTLFLDPKWRKEGNGYLLSKSRFLFMAAFRERFNEKVVAEMRGVIDEHGYSPFWESLG 180

Query: 181 KRFFSMDFSRADFLCGTGQKAFIAELMPKHPIYTHFLSQEAQDVIGQVHPQTAPARAVLE 240
           KRFF+M+FSRAD+LCGTGQKAFIA LMPKHP+Y  FLS EA+ VIG+VHPQTAPARAVLE
Sbjct: 181 KRFFAMEFSRADYLCGTGQKAFIAALMPKHPLYIDFLSDEARAVIGEVHPQTAPARAVLE 240

Query: 241 KEGFRYRNYIDIFDGGPTLECDIDRVRAIRKSRLVEVAEGQPAQGDFPACLVANENYHHF 300
           KEGFRY NY+DIFDGGPTLEC+IDRVRAIRKSRLV VAEGQP QG++PACLVANE Y  F
Sbjct: 241 KEGFRYLNYVDIFDGGPTLECEIDRVRAIRKSRLVTVAEGQPVQGEWPACLVANEQYQQF 300

Query: 301 RVVLVRTDPATERLILTAAQLDALKCHAGDRVRLVRLCAEEK 342
           R +LV  DP ++RL+L+A +LDALKCH GD++RLVRLC EEK
Sbjct: 301 RAMLVHADPESDRLVLSARELDALKCHPGDQIRLVRLCPEEK 342


Lambda     K      H
   0.321    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 504
Number of extensions: 6
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 344
Length adjustment: 29
Effective length of query: 315
Effective length of database: 315
Effective search space:    99225
Effective search space used:    99225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)

Align candidate BWI76_RS11675 BWI76_RS11675 (arginine N-succinyltransferase)
to HMM TIGR03244 (astA: arginine N-succinyltransferase (EC 2.3.1.109))

Software error:

../bin/blast/fastacmd -i /tmp/list.12129.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.12129.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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