Align agmatinase; EC 3.5.3.11 (characterized)
to candidate BWI76_RS24025 BWI76_RS24025 agmatinase
Query= CharProtDB::CH_024895 (306 letters) >FitnessBrowser__Koxy:BWI76_RS24025 Length = 306 Score = 615 bits (1587), Expect = 0.0 Identities = 302/306 (98%), Positives = 303/306 (99%) Query: 1 MSTLGHQYDNSLVSNAFGFLRLPMNFQPYDSDADWVITGVPFDMATSGRAGGRHGPAAIR 60 MSTLGHQYDNSLVSNAFGFLRLPMNF PYDSDADWVITGVPFDMATSGRAGGRHGPAAIR Sbjct: 1 MSTLGHQYDNSLVSNAFGFLRLPMNFMPYDSDADWVITGVPFDMATSGRAGGRHGPAAIR 60 Query: 61 QVSTNLAWEHNRFPWNFDMRERLNVVDCGDLVYAFGDAREMSEKLQAHAEKLLAAGKRML 120 QVSTNLAWEHNRFPWNFDMRERLNVVDCGDLVYAFGDAREMSEKLQAHAEKLLAAGKRML Sbjct: 61 QVSTNLAWEHNRFPWNFDMRERLNVVDCGDLVYAFGDAREMSEKLQAHAEKLLAAGKRML 120 Query: 121 SFGGDHFVTLPLLRAHAKHFGKMALVHFDAHTDTYANGCEFDHGTMFYTAPKEGLIDPNH 180 SFGGDHFVTLPLLRAHAKHFGKMALVHFDAHTDTYANGCEFDHGTMFYTAP EGLIDP+H Sbjct: 121 SFGGDHFVTLPLLRAHAKHFGKMALVHFDAHTDTYANGCEFDHGTMFYTAPNEGLIDPHH 180 Query: 181 SVQIGIRTEFDKDNGFTVLDACQVNDRSVDDVIAQVKQIVGDMPVYLTFDIDCLDPAFAP 240 SVQIGIRTEFDKDNGFTVLDA QVNDRSVDDVIAQVKQIVGDMPVYLTFDIDCLDPAFAP Sbjct: 181 SVQIGIRTEFDKDNGFTVLDAGQVNDRSVDDVIAQVKQIVGDMPVYLTFDIDCLDPAFAP 240 Query: 241 GTGTPVIGGLTSDRAIKLVRGLKDLNIVGMDVVEVAPAYDQSEITALAAATLALEMLYIQ 300 GTGTPVIGGLTSDRAIKLVRGLKDLNIVGMDVVEVAPAYDQSEITALAAATLALEMLYIQ Sbjct: 241 GTGTPVIGGLTSDRAIKLVRGLKDLNIVGMDVVEVAPAYDQSEITALAAATLALEMLYIQ 300 Query: 301 AAKKGE 306 AAKKGE Sbjct: 301 AAKKGE 306 Lambda K H 0.322 0.138 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 529 Number of extensions: 11 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 306 Length of database: 306 Length adjustment: 27 Effective length of query: 279 Effective length of database: 279 Effective search space: 77841 Effective search space used: 77841 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 48 (23.1 bits)
Align candidate BWI76_RS24025 BWI76_RS24025 (agmatinase)
to HMM TIGR01230 (speB: agmatinase (EC 3.5.3.11))
../bin/blast/fastacmd -i /tmp/list.30428.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.30428.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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