Align phosphopentomutase (EC 5.4.2.7) (characterized)
to candidate BWI76_RS04140 BWI76_RS04140 phosphopentomutase
Query= BRENDA::P0A6K6 (407 letters) >FitnessBrowser__Koxy:BWI76_RS04140 Length = 407 Score = 790 bits (2041), Expect = 0.0 Identities = 379/406 (93%), Positives = 394/406 (97%) Query: 1 MKRAFIMVLDSFGIGATEDAERFGDVGADTLGHIAEACAKGEADNGRKGPLNLPNLTRLG 60 MKRAFIMVLDSFGIGATEDA+RFGDVG+DT+GHIAEACAKGEADNGRKGPLNLPNLTRLG Sbjct: 1 MKRAFIMVLDSFGIGATEDADRFGDVGSDTMGHIAEACAKGEADNGRKGPLNLPNLTRLG 60 Query: 61 LAKAHEGSTGFIPAGMDGNAEVIGAYAWAHEMSSGKDTPSGHWEIAGVPVLFEWGYFSDH 120 L KAHEGSTG + AGMDG+AEVIGAYAWAHE+SSGKDTPSGHWEIAGVPVLF+WGYF +H Sbjct: 61 LVKAHEGSTGKVAAGMDGSAEVIGAYAWAHELSSGKDTPSGHWEIAGVPVLFDWGYFPEH 120 Query: 121 ENSFPQELLDKLVERANLPGYLGNCHSSGTVILDQLGEEHMKTGKPIFYTSADSVFQIAC 180 ENSFPQELLDKLV+RANLPGYLGNCHSSGTVILDQLGEEHMKTGKPIFYTSADSVFQIAC Sbjct: 121 ENSFPQELLDKLVKRANLPGYLGNCHSSGTVILDQLGEEHMKTGKPIFYTSADSVFQIAC 180 Query: 181 HEETFGLDKLYELCEIAREELTNGGYNIGRVIARPFIGDKAGNFQRTGNRHDLAVEPPAP 240 HEET+GLDKLYELCEIAREELT GGYNIGRVIARPFIGDKAGNFQRTGNRHDLAVEPPAP Sbjct: 181 HEETYGLDKLYELCEIAREELTEGGYNIGRVIARPFIGDKAGNFQRTGNRHDLAVEPPAP 240 Query: 241 TVLQKLVDEKHGQVVSVGKIADIYANCGITKKVKATGLDALFDATIKEMKEAGDNTIVFT 300 TVLQKLVDEK GQVVSVGKIADIYANCGITKKVKATGLDALFDAT+KEMKEAGD TIVFT Sbjct: 241 TVLQKLVDEKKGQVVSVGKIADIYANCGITKKVKATGLDALFDATVKEMKEAGDETIVFT 300 Query: 301 NFVDFDSSWGHRRDVAGYAAGLELFDRRLPELMSLLRDDDILILTADHGCDPTWTGTDHT 360 NFVDFDSSWGHRRDVAGYAAGLELFDRRLPELM L+ +DDILILTADHGCDPTWTGTDHT Sbjct: 301 NFVDFDSSWGHRRDVAGYAAGLELFDRRLPELMELVGEDDILILTADHGCDPTWTGTDHT 360 Query: 361 REHIPVLVYGPKVKPGSLGHRETFADIGQTLAKYFGTSDMEYGKAM 406 REHIPVL+YGPKVKPGSLGHRETFADIGQTLA YFGTS M+YGK M Sbjct: 361 REHIPVLIYGPKVKPGSLGHRETFADIGQTLATYFGTSAMDYGKNM 406 Lambda K H 0.318 0.138 0.422 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 820 Number of extensions: 28 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 407 Length of database: 407 Length adjustment: 31 Effective length of query: 376 Effective length of database: 376 Effective search space: 141376 Effective search space used: 141376 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.9 bits)
Align candidate BWI76_RS04140 BWI76_RS04140 (phosphopentomutase)
to HMM TIGR01696 (deoB: phosphopentomutase (EC 5.4.2.7))
../bin/blast/fastacmd -i /tmp/list.15172.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.15172.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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