Align Probable propionate kinase; EC 2.7.2.15 (characterized)
to candidate BWI76_RS23200 BWI76_RS23200 propionate kinase
Query= SwissProt::P74879 (404 letters) >FitnessBrowser__Koxy:BWI76_RS23200 Length = 404 Score = 703 bits (1814), Expect = 0.0 Identities = 350/404 (86%), Positives = 377/404 (93%) Query: 1 MSYKIMAINAGSSSLKFQLLEMPQGDMLCQGLIERIGMADAQVTIKTHSQKWQETVPVAD 60 MSYKIMAINAGSSSLKFQLLEMPQG+ LCQGLIERIGMA+AQVT+KT +QKWQE+ P+AD Sbjct: 1 MSYKIMAINAGSSSLKFQLLEMPQGETLCQGLIERIGMANAQVTLKTPAQKWQESAPIAD 60 Query: 61 HRDAVTLLLEKLLGYQIINSLRDIDGVGHRVAHGGEFFKDSTLVTDETLAQIERLAELAP 120 HR+AVTLLLEKLLGY+II SL+DIDGVGHRVAHGGE FKDST VTDE+LA+IERLAELAP Sbjct: 61 HREAVTLLLEKLLGYRIIESLQDIDGVGHRVAHGGERFKDSTPVTDESLAEIERLAELAP 120 Query: 121 LHNPVNALGIHVFRQLLPDAPSVAVFDTAFHQTLDEPAYIYPLPWHYYAELGIRRYGFHG 180 LHNPVNALGI VFRQLLPD PSVAVFDTAFHQTLDE A+IYPLPW YY+ELGIRRYGFHG Sbjct: 121 LHNPVNALGIKVFRQLLPDTPSVAVFDTAFHQTLDERAFIYPLPWRYYSELGIRRYGFHG 180 Query: 181 TSHKYVSGVLAEKLGVPLSALRVICCHLGNGSSICAIKNGRSVNTSMGFTPQSGVMMGTR 240 TSHKYVS LAEKLGVPLSALRV+CCHLGNGSS+CAIK GRSVNTSMGFTPQSGVMMGTR Sbjct: 181 TSHKYVSATLAEKLGVPLSALRVVCCHLGNGSSVCAIKGGRSVNTSMGFTPQSGVMMGTR 240 Query: 241 SGDIDPSILPWIAQRESKTPQQLNQLLNNESGLLGVSGVSSDYRDVEQAANTGNRQAKLA 300 SGDIDPSILPW+A E +TP+QLNQLLNNESGLLGVSGVS DYRDVEQAA+ GNR+A LA Sbjct: 241 SGDIDPSILPWLALHEGQTPEQLNQLLNNESGLLGVSGVSHDYRDVEQAADGGNRRAALA 300 Query: 301 LTLFAERIRATIGSYIMQMGGLDALVFTGGIGENSARARSAVCHNLQFLGLAVDEEKNQR 360 L LFAERIRATIGSYIMQMGG+DAL+FTGGIGENSARARSA+CHNL FLGL+VDEEKNQ Sbjct: 301 LALFAERIRATIGSYIMQMGGIDALIFTGGIGENSARARSAICHNLNFLGLSVDEEKNQH 360 Query: 361 NATFIQTENALVKVAVINTNEELMIAQDVMRIALPATEGLCVPA 404 NATFIQ E+ALVKVAVINTNEELMIA+DVMR+ALPA E L V A Sbjct: 361 NATFIQAEHALVKVAVINTNEELMIARDVMRLALPAAETLTVSA 404 Lambda K H 0.319 0.135 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 630 Number of extensions: 7 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 404 Length of database: 404 Length adjustment: 31 Effective length of query: 373 Effective length of database: 373 Effective search space: 139129 Effective search space used: 139129 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (23.9 bits)
Align candidate BWI76_RS23200 BWI76_RS23200 (propionate kinase)
to HMM TIGR00016 (ackA: acetate kinase (EC 2.7.2.1))
../bin/blast/fastacmd -i /tmp/list.4958.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.4958.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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