GapMind for catabolism of small carbon sources

 

Alignments for a candidate for hutG in Klebsiella michiganensis M5al

Align Formiminoglutamase (EC 3.5.3.8) (characterized)
to candidate BWI76_RS08725 BWI76_RS08725 formimidoylglutamase

Query= reanno::Koxy:BWI76_RS08725
         (318 letters)



>FitnessBrowser__Koxy:BWI76_RS08725
          Length = 318

 Score =  633 bits (1633), Expect = 0.0
 Identities = 318/318 (100%), Positives = 318/318 (100%)

Query: 1   MKLWQPTPAALWQGRDDSAEAANALRLFQTIVRAERFEPEMLAGDIALLGFACDEGVRRN 60
           MKLWQPTPAALWQGRDDSAEAANALRLFQTIVRAERFEPEMLAGDIALLGFACDEGVRRN
Sbjct: 1   MKLWQPTPAALWQGRDDSAEAANALRLFQTIVRAERFEPEMLAGDIALLGFACDEGVRRN 60

Query: 61  KGRTGAERGPETLRRALANMASHDGHDRCVDMGTIHVADDALEAAQQALREAVTACQRAG 120
           KGRTGAERGPETLRRALANMASHDGHDRCVDMGTIHVADDALEAAQQALREAVTACQRAG
Sbjct: 61  KGRTGAERGPETLRRALANMASHDGHDRCVDMGTIHVADDALEAAQQALREAVTACQRAG 120

Query: 121 KRTLVLGGGHETAFGHGAGVLDAFPGEEVGIINLDAHLDLRIADRASSGTPFRQLALACE 180
           KRTLVLGGGHETAFGHGAGVLDAFPGEEVGIINLDAHLDLRIADRASSGTPFRQLALACE
Sbjct: 121 KRTLVLGGGHETAFGHGAGVLDAFPGEEVGIINLDAHLDLRIADRASSGTPFRQLALACE 180

Query: 181 AQRRAFHYACIGVSRAANTQALLDEAARRGVTIIEDLDVLNAFEARAIPELARNIARYDR 240
           AQRRAFHYACIGVSRAANTQALLDEAARRGVTIIEDLDVLNAFEARAIPELARNIARYDR
Sbjct: 181 AQRRAFHYACIGVSRAANTQALLDEAARRGVTIIEDLDVLNAFEARAIPELARNIARYDR 240

Query: 241 LYLTIDLDVLPAREMPAVSAPAALGIPLATLLRIVEPLCRSGKLQAVDLVEFNPQYDIDS 300
           LYLTIDLDVLPAREMPAVSAPAALGIPLATLLRIVEPLCRSGKLQAVDLVEFNPQYDIDS
Sbjct: 241 LYLTIDLDVLPAREMPAVSAPAALGIPLATLLRIVEPLCRSGKLQAVDLVEFNPQYDIDS 300

Query: 301 QGARAAARLAWQIAHWWQ 318
           QGARAAARLAWQIAHWWQ
Sbjct: 301 QGARAAARLAWQIAHWWQ 318


Lambda     K      H
   0.322    0.135    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 512
Number of extensions: 12
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 318
Length adjustment: 27
Effective length of query: 291
Effective length of database: 291
Effective search space:    84681
Effective search space used:    84681
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)

Align candidate BWI76_RS08725 BWI76_RS08725 (formimidoylglutamase)
to HMM TIGR01227 (hutG: formimidoylglutamase (EC 3.5.3.8))

Software error:

../bin/blast/fastacmd -i /tmp/list.7476.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.7476.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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