Align acetyl-CoA C-acetyltransferase (EC 2.3.1.16) (characterized)
to candidate BWI76_RS23445 BWI76_RS23445 acetyl-CoA acetyltransferase
Query= metacyc::MONOMER-20831 (393 letters) >FitnessBrowser__Koxy:BWI76_RS23445 Length = 391 Score = 533 bits (1374), Expect = e-156 Identities = 260/392 (66%), Positives = 328/392 (83%), Gaps = 1/392 (0%) Query: 1 MQDVVIVAATRTAVGSFQGSLASIPAPELGAAVIRRLLEQTGLDPAQVDEVILGQVLTAG 60 M+DVVIV A RT +G FQG+L+ A ELG+ V++ L+E++G+DP +DEVILGQVLTAG Sbjct: 1 MKDVVIVGALRTPIGCFQGTLSRHSAVELGSVVVKALVERSGVDPQSIDEVILGQVLTAG 60 Query: 61 SGQNPARQASILAGLPHAVPSLTLNKVCGSGLKALHLGAQAIRCGDAEVIIAGGMENMSL 120 +GQNPARQ++I GLP+ V ++T+N VCGSGLKALHL QAI+CG+A+V+IAGG ENMS Sbjct: 61 TGQNPARQSAIRGGLPNTVSAITINDVCGSGLKALHLATQAIQCGEADVVIAGGQENMSR 120 Query: 121 APYVLPAARTGLRMGHAKMIDSMITDGLWDAFNDYHMGITAENLVDKYGISREAQDAFAA 180 AP+VL +RTG ++G++++IDS++ DGLWDAFNDYHMG+TAENL +YGISRE QDA+A Sbjct: 121 APHVLTDSRTGAQLGNSQLIDSLVHDGLWDAFNDYHMGVTAENLAREYGISRELQDAWAL 180 Query: 181 ASQQKATAAIEAGRFVDEITPILIPQRKGDPVAFAVDEQPRAGTTAESLAKLKPAFKKDG 240 +SQ KA AI++GRF DEI P+ + G P DEQPR +AE+LA L P F + G Sbjct: 181 SSQHKARRAIDSGRFRDEIVPVT-SELNGIPRLVDTDEQPRVDPSAEALASLLPTFDQQG 239 Query: 241 SVTAGNASSLNDGAAAVLLMSADKAKALGLPVLARIASYANAGVDPAIMGIGPVSATRRC 300 SVTAGNASS+NDGAAAV++MS KA+ALGLP+LARI ++A+ GVDPA+MGI PV ATRRC Sbjct: 240 SVTAGNASSINDGAAAVMMMSETKAEALGLPILARIRAFASVGVDPALMGIAPVHATRRC 299 Query: 301 LDKAGWSLGDLDLIEANEAFAAQSLAVGKELEWDAEKVNVNGGAIAIGHPIGASGCRVLV 360 L++AGW L ++DLIEANEAFAAQ+++VG+ LEWD +VNVNGGAIA+GHPIGASGCR+LV Sbjct: 300 LERAGWKLDEVDLIEANEAFAAQAISVGRVLEWDERRVNVNGGAIALGHPIGASGCRILV 359 Query: 361 TLLHEMIKRDAKKGLATLCIGGGQGVALALER 392 +L+HEMIKRDA+KGLATLCIGGGQGVALA+ER Sbjct: 360 SLVHEMIKRDARKGLATLCIGGGQGVALAVER 391 Lambda K H 0.317 0.133 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 471 Number of extensions: 16 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 393 Length of database: 391 Length adjustment: 31 Effective length of query: 362 Effective length of database: 360 Effective search space: 130320 Effective search space used: 130320 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.9 bits)
Align candidate BWI76_RS23445 BWI76_RS23445 (acetyl-CoA acetyltransferase)
to HMM TIGR01930 (acetyl-CoA C-acyltransferase (EC 2.3.1.16))
../bin/blast/fastacmd -i /tmp/list.11897.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.11897.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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