Align branched-chain-amino-acid transaminase (EC 2.6.1.42) (characterized)
to candidate BWI76_RS00970 BWI76_RS00970 branched chain amino acid aminotransferase
Query= BRENDA::P0AB80 (309 letters) >FitnessBrowser__Koxy:BWI76_RS00970 Length = 309 Score = 610 bits (1574), Expect = e-179 Identities = 296/309 (95%), Positives = 306/309 (99%) Query: 1 MTTKKADYIWFNGEMVRWEDAKVHVMSHALHYGTSVFEGIRCYDSHKGPVVFRHREHMQR 60 MTTKKADYIWFNGEMV W +AKVHVMSHALHYGTSVFEGIRCYDSHKGPVVFRHREHMQR Sbjct: 1 MTTKKADYIWFNGEMVPWGEAKVHVMSHALHYGTSVFEGIRCYDSHKGPVVFRHREHMQR 60 Query: 61 LHDSAKIYRFPVSQSIDELMEACRDVIRKNNLTSAYIRPLIFVGDVGMGVNPPAGYSTDV 120 LHDSAKIYRFPVSQS+DELMEACR+VIRKN+LTSAYIRPL+FVGDVGMGVNPP GY+TDV Sbjct: 61 LHDSAKIYRFPVSQSVDELMEACREVIRKNSLTSAYIRPLVFVGDVGMGVNPPPGYNTDV 120 Query: 121 IIAAFPWGAYLGAEALEQGIDAMVSSWNRAAPNTIPTAAKAGGNYLSSLLVGSEARRHGY 180 IIAAFPWGAYLGAEAL+QGIDAMVSSWNRAAPNTIPTAAKAGGNYLSSLLVGSEARRHGY Sbjct: 121 IIAAFPWGAYLGAEALDQGIDAMVSSWNRAAPNTIPTAAKAGGNYLSSLLVGSEARRHGY 180 Query: 181 QEGIALDVNGYISEGAGENLFEVKDGVLFTPPFTSSALPGITRDAIIKLAKELGIEVREQ 240 QEGIALDVNGYISEGAGENLFEVKDGVLFTPPFTSSALPGITRDAIIKLAK+LG+EVREQ Sbjct: 181 QEGIALDVNGYISEGAGENLFEVKDGVLFTPPFTSSALPGITRDAIIKLAKDLGLEVREQ 240 Query: 241 VLSRESLYLADEVFMSGTAAEITPVRSVDGIQVGEGRCGPVTKRIQQAFFGLFTGETEDK 300 VLSRESLYLADEVFMSGTAAEITPVRSVDGIQVGEGRCGP+TKRIQQAFFGLFTGETEDK Sbjct: 241 VLSRESLYLADEVFMSGTAAEITPVRSVDGIQVGEGRCGPITKRIQQAFFGLFTGETEDK 300 Query: 301 WGWLDQVNQ 309 WGWLDQVNQ Sbjct: 301 WGWLDQVNQ 309 Lambda K H 0.319 0.136 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 496 Number of extensions: 8 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 309 Length of database: 309 Length adjustment: 27 Effective length of query: 282 Effective length of database: 282 Effective search space: 79524 Effective search space used: 79524 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 48 (23.1 bits)
Align candidate BWI76_RS00970 BWI76_RS00970 (branched chain amino acid aminotransferase)
to HMM TIGR01122 (ilvE: branched-chain amino acid aminotransferase (EC 2.6.1.42))
../bin/blast/fastacmd -i /tmp/list.23983.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.23983.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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