Align 3-oxoadipyl-CoA/3-oxo-5,6-dehydrosuberyl-CoA thiolase; EC 2.3.1.174; EC 2.3.1.223 (characterized)
to candidate BWI76_RS13135 BWI76_RS13135 3-oxoadipyl-CoA thiolase
Query= SwissProt::P0C7L2 (401 letters) >FitnessBrowser__Koxy:BWI76_RS13135 Length = 401 Score = 654 bits (1688), Expect = 0.0 Identities = 333/401 (83%), Positives = 361/401 (90%) Query: 1 MREAFICDGIRTPIGRYGGALSSVRADDLAAIPLRELLVRNPRLDAECIDDVILGCANQA 60 MR+AFICDGIRTPIGRYGGAL+S+RADDLAAIPLRELL RNP+ D IDDVILGCANQA Sbjct: 1 MRDAFICDGIRTPIGRYGGALASMRADDLAAIPLRELLSRNPKFDPASIDDVILGCANQA 60 Query: 61 GEDNRNVARMATLLAGLPQSVSGTTINRLCGSGLDALGFAARAIKAGDGDLLIAGGVESM 120 GEDNRNVA MATLLAG P +V GTT+NRLCGSGLDA+GFAARAIKAG+ DL+IAGGVESM Sbjct: 61 GEDNRNVAHMATLLAGYPHTVPGTTVNRLCGSGLDAIGFAARAIKAGEADLMIAGGVESM 120 Query: 121 SRAPFVMGKAASAFSRQAEMFDTTIGWRFVNPLMAQQFGTDSMPETAENVAELLKISRED 180 SRAPFVMGKA++A+ RQAE+FDTTIGWRFVNPLM Q+FGTDSMPETAENVAELL ISR D Sbjct: 121 SRAPFVMGKASAAYQRQAELFDTTIGWRFVNPLMQQRFGTDSMPETAENVAELLNISRAD 180 Query: 181 QDSFALRSQQRTAKAQSSGILAEEIVPVVLKNKKGVVTEIQHDEHLRPETTLEQLRGLKA 240 QD+FA RSQQR+A+AQ GILA+EIVPV + KG V+ + DEH R ETTLEQL LK Sbjct: 181 QDAFAYRSQQRSARAQRDGILAQEIVPVPIIGGKGAVSTVYEDEHPRAETTLEQLSRLKT 240 Query: 241 PFRANGVITAGNASGVNDGAAALIIASEQMAAAQGLTPRARIVAMATAGVEPRLMGLGPV 300 PFR GV+TAGNASGVNDGAAALIIAS Q A AQGLTPRARIVAMATAGVEP+LMGLGPV Sbjct: 241 PFRKGGVVTAGNASGVNDGAAALIIASSQQAIAQGLTPRARIVAMATAGVEPKLMGLGPV 300 Query: 301 PATRRVLERAGLSIHDMDVIELNEAFAAQALGVLRELGLPDDAPHVNPNGGAIALGHPLG 360 PA R+VLERAGLSI DMD+IELNEAFAAQALGVLR+LGL DDAPHVNPNGGAIALGHPLG Sbjct: 301 PAVRKVLERAGLSIKDMDLIELNEAFAAQALGVLRQLGLADDAPHVNPNGGAIALGHPLG 360 Query: 361 MSGARLALAASHELHRRNGRYALCTMCIGVGQGIAMILERV 401 MSGARLAL+AS EL RR+GRYALCTMCIGVGQGIAMILERV Sbjct: 361 MSGARLALSASLELQRRSGRYALCTMCIGVGQGIAMILERV 401 Lambda K H 0.319 0.135 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 599 Number of extensions: 8 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 401 Length of database: 401 Length adjustment: 31 Effective length of query: 370 Effective length of database: 370 Effective search space: 136900 Effective search space used: 136900 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (23.9 bits)
Align candidate BWI76_RS13135 BWI76_RS13135 (3-oxoadipyl-CoA thiolase)
to HMM TIGR02430 (pcaF: 3-oxoadipyl-CoA thiolase (EC 2.3.1.174))
../bin/blast/fastacmd -i /tmp/list.26012.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.26012.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.