Align L-lactaldehyde reductase (EC 1.1.1.77) (characterized)
to candidate BWI76_RS00645 BWI76_RS00645 lactaldehyde reductase
Query= metacyc::STM4044-MONOMER (382 letters) >FitnessBrowser__Koxy:BWI76_RS00645 Length = 382 Score = 690 bits (1780), Expect = 0.0 Identities = 344/382 (90%), Positives = 364/382 (95%) Query: 1 MSFMLALPKISLHGAGAIADMVNLVANKQWGKALIVTDGQLVKLGLLDSLFSALDEHQMS 60 MSFMLALPKISLHGAGAI DMV LVA K+WGKALIVTDGQLVKLGLLDSLF+A+DE QM+ Sbjct: 1 MSFMLALPKISLHGAGAIGDMVKLVAGKRWGKALIVTDGQLVKLGLLDSLFAAMDEQQMA 60 Query: 61 YHLFDEVFPNPTEELVQKGFAAYQSAECDYIIAFGGGSPIDTAKAVKILTANPGPSTAYS 120 YHLFDEVFPNPTE LVQKG+AAY A CDY+IAFGGGSPIDTAKAVKILTANPGPSTAYS Sbjct: 61 YHLFDEVFPNPTEALVQKGYAAYCEAGCDYLIAFGGGSPIDTAKAVKILTANPGPSTAYS 120 Query: 121 GVGKVKNAGVPLVAINTTAGTAAEMTSNAVIIDSARKVKEVIIDPNIIPDIAVDDASVML 180 GVGKV N GVPLVAINTTAGTAAEMTSNAVIID+ R+VKEVIIDPNIIPDIAVDDASVML Sbjct: 121 GVGKVTNPGVPLVAINTTAGTAAEMTSNAVIIDAERQVKEVIIDPNIIPDIAVDDASVML 180 Query: 181 EIPASVTAATGMDALTHAVEAYVSVGAHPLTDANALEAIRLINLWLPKAVDDGHNLEARE 240 +IP ++TAATGMDALTHA+EA+VSVGAHPLTDANA EAIRLINLWLPKAVDDGHNLEARE Sbjct: 181 DIPPAITAATGMDALTHAIEAFVSVGAHPLTDANAQEAIRLINLWLPKAVDDGHNLEARE 240 Query: 241 QMAFGQYLAGMAFNSAGLGLVHALAHQPGATHNLPHGVCNAILLPIVENFNRPNAVARFA 300 QMAFGQYLAGMAFNSAGLGLVHALAHQPGATHNLPHGVCNAILLPI+ENFNRPNAV+RFA Sbjct: 241 QMAFGQYLAGMAFNSAGLGLVHALAHQPGATHNLPHGVCNAILLPIIENFNRPNAVSRFA 300 Query: 301 RIAQAMGVETRGMSDEAASQEAINAIRTLSKRVGIPEGFSKLGVTKEDIEGWLDKALADP 360 R+AQAMGV+TRGMSDEAAS EAINAIR LSKRVGIP+GFS+LGV+K DIEGWLDKALADP Sbjct: 301 RVAQAMGVDTRGMSDEAASMEAINAIRALSKRVGIPQGFSQLGVSKADIEGWLDKALADP 360 Query: 361 CAPCNPRTASRDEVRGLYLEAL 382 CAPCNPR ASRDEVR LYLEAL Sbjct: 361 CAPCNPRAASRDEVRELYLEAL 382 Lambda K H 0.317 0.133 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 660 Number of extensions: 12 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 382 Length of database: 382 Length adjustment: 30 Effective length of query: 352 Effective length of database: 352 Effective search space: 123904 Effective search space used: 123904 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.9 bits)
Align candidate BWI76_RS00645 BWI76_RS00645 (lactaldehyde reductase)
to HMM TIGR02638 (fucO: lactaldehyde reductase (EC 1.1.1.77))
../bin/blast/fastacmd -i /tmp/list.21276.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.21276.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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