GapMind for catabolism of small carbon sources

 

Alignments for a candidate for 1pfk in Klebsiella michiganensis M5al

Align 1-phosphofructokinase (characterized)
to candidate BWI76_RS19730 BWI76_RS19730 1-phosphofructokinase

Query= CharProtDB::CH_024159
         (312 letters)



>FitnessBrowser__Koxy:BWI76_RS19730
          Length = 312

 Score =  606 bits (1563), Expect = e-178
 Identities = 305/312 (97%), Positives = 307/312 (98%)

Query: 1   MSRRVATITLNPAYDLVGFCPEIERGEVNLVKTTGLHAAGKGINVAKVLKDLGIDVTVGG 60
           MSRRVATITLNPAYDLVGF PEIERGEVNLV+TTGLHAAGKGINVAKVLKDLGIDVTVGG
Sbjct: 1   MSRRVATITLNPAYDLVGFTPEIERGEVNLVRTTGLHAAGKGINVAKVLKDLGIDVTVGG 60

Query: 61  FLGKDNQDGFQQLFSELGIANRFQVVQGRTRINVKLTEKDGEVTDFNFSGFEVTPADWER 120
           FLGKDNQDGFQQLFSELGIANRFQVVQGRTRINVKLTEKDGEVTDFNFSGFEVTP DWER
Sbjct: 61  FLGKDNQDGFQQLFSELGIANRFQVVQGRTRINVKLTEKDGEVTDFNFSGFEVTPGDWER 120

Query: 121 FVTDSLSWLGQFDMVCVSGSLPSGVSPEAFTDWMTRLRSQCPCIIFDSSREALVAGLKAA 180
           FV DSLSWLGQFDMVCVSGSLPSGVSPEAFTDWMTRLRSQCPCIIFDSSREALVAGLKAA
Sbjct: 121 FVNDSLSWLGQFDMVCVSGSLPSGVSPEAFTDWMTRLRSQCPCIIFDSSREALVAGLKAA 180

Query: 181 PWLVKPNRRELEIWAGRKLPEMKDVIEAAHALREQGIAHVVISLGAEGALWVNASGEWIA 240
           PWLVKPNRRELEIWAGRKLPEMKDVIEAAHALREQGIAHVVISLG EGALWVNASGEWIA
Sbjct: 181 PWLVKPNRRELEIWAGRKLPEMKDVIEAAHALREQGIAHVVISLGEEGALWVNASGEWIA 240

Query: 241 KPPSVDVVSTVGAGDSMVGGLIYGLLMRESSEHTLRLATAVAALAVSQSNVGITDRPQLA 300
           KPPSV+VVSTVGAGDSMVGGLIYGLLMRESSEHTLRLATAVAALAVSQSNVGITDR QLA
Sbjct: 241 KPPSVEVVSTVGAGDSMVGGLIYGLLMRESSEHTLRLATAVAALAVSQSNVGITDRTQLA 300

Query: 301 AMMARVDLQPFN 312
           AMMARVDLQPFN
Sbjct: 301 AMMARVDLQPFN 312


Lambda     K      H
   0.319    0.135    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 505
Number of extensions: 7
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 312
Length adjustment: 27
Effective length of query: 285
Effective length of database: 285
Effective search space:    81225
Effective search space used:    81225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)

Align candidate BWI76_RS19730 BWI76_RS19730 (1-phosphofructokinase)
to HMM TIGR03828 (pfkB: 1-phosphofructokinase (EC 2.7.1.56))

Software error:

../bin/blast/fastacmd -i /tmp/list.634.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.634.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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