Align 1-phosphofructokinase (characterized)
to candidate BWI76_RS19730 BWI76_RS19730 1-phosphofructokinase
Query= CharProtDB::CH_024159 (312 letters) >FitnessBrowser__Koxy:BWI76_RS19730 Length = 312 Score = 606 bits (1563), Expect = e-178 Identities = 305/312 (97%), Positives = 307/312 (98%) Query: 1 MSRRVATITLNPAYDLVGFCPEIERGEVNLVKTTGLHAAGKGINVAKVLKDLGIDVTVGG 60 MSRRVATITLNPAYDLVGF PEIERGEVNLV+TTGLHAAGKGINVAKVLKDLGIDVTVGG Sbjct: 1 MSRRVATITLNPAYDLVGFTPEIERGEVNLVRTTGLHAAGKGINVAKVLKDLGIDVTVGG 60 Query: 61 FLGKDNQDGFQQLFSELGIANRFQVVQGRTRINVKLTEKDGEVTDFNFSGFEVTPADWER 120 FLGKDNQDGFQQLFSELGIANRFQVVQGRTRINVKLTEKDGEVTDFNFSGFEVTP DWER Sbjct: 61 FLGKDNQDGFQQLFSELGIANRFQVVQGRTRINVKLTEKDGEVTDFNFSGFEVTPGDWER 120 Query: 121 FVTDSLSWLGQFDMVCVSGSLPSGVSPEAFTDWMTRLRSQCPCIIFDSSREALVAGLKAA 180 FV DSLSWLGQFDMVCVSGSLPSGVSPEAFTDWMTRLRSQCPCIIFDSSREALVAGLKAA Sbjct: 121 FVNDSLSWLGQFDMVCVSGSLPSGVSPEAFTDWMTRLRSQCPCIIFDSSREALVAGLKAA 180 Query: 181 PWLVKPNRRELEIWAGRKLPEMKDVIEAAHALREQGIAHVVISLGAEGALWVNASGEWIA 240 PWLVKPNRRELEIWAGRKLPEMKDVIEAAHALREQGIAHVVISLG EGALWVNASGEWIA Sbjct: 181 PWLVKPNRRELEIWAGRKLPEMKDVIEAAHALREQGIAHVVISLGEEGALWVNASGEWIA 240 Query: 241 KPPSVDVVSTVGAGDSMVGGLIYGLLMRESSEHTLRLATAVAALAVSQSNVGITDRPQLA 300 KPPSV+VVSTVGAGDSMVGGLIYGLLMRESSEHTLRLATAVAALAVSQSNVGITDR QLA Sbjct: 241 KPPSVEVVSTVGAGDSMVGGLIYGLLMRESSEHTLRLATAVAALAVSQSNVGITDRTQLA 300 Query: 301 AMMARVDLQPFN 312 AMMARVDLQPFN Sbjct: 301 AMMARVDLQPFN 312 Lambda K H 0.319 0.135 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 505 Number of extensions: 7 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 312 Length of database: 312 Length adjustment: 27 Effective length of query: 285 Effective length of database: 285 Effective search space: 81225 Effective search space used: 81225 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 48 (23.1 bits)
Align candidate BWI76_RS19730 BWI76_RS19730 (1-phosphofructokinase)
to HMM TIGR03828 (pfkB: 1-phosphofructokinase (EC 2.7.1.56))
../bin/blast/fastacmd -i /tmp/list.634.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.634.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.