Align glucokinase (EC 2.7.1.1; EC 2.7.1.2; EC 2.7.1.8) (characterized)
to candidate BWI76_RS20510 BWI76_RS20510 glucokinase
Query= ecocyc::GLUCOKIN-MONOMER (321 letters) >FitnessBrowser__Koxy:BWI76_RS20510 Length = 321 Score = 598 bits (1542), Expect = e-176 Identities = 290/321 (90%), Positives = 306/321 (95%) Query: 1 MTKYALVGDVGGTNARLALCDIASGEISQAKTYSGLDYPSLEAVIRVYLEEHKVEVKDGC 60 MTK+ALVGDVGGTNARLALCD+ SGEIS+AKTYSGLDYPSLEAV++VYLEEH V+V+DGC Sbjct: 1 MTKFALVGDVGGTNARLALCDLTSGEISRAKTYSGLDYPSLEAVVQVYLEEHNVQVEDGC 60 Query: 61 IAIACPITGDWVAMTNHTWAFSIAEMKKNLGFSHLEIINDFTAVSMAIPMLKKEHLIQFG 120 IAIACPITGDWVAMTNHTWAFSIAEMKKNLGFSHLEIINDFTAVSMAIPMLK EHLIQFG Sbjct: 61 IAIACPITGDWVAMTNHTWAFSIAEMKKNLGFSHLEIINDFTAVSMAIPMLKAEHLIQFG 120 Query: 121 GAEPVEGKPIAVYGAGTGLGVAHLVHVDKRWVSLPGEGGHVDFAPNSEEEAIILEILRAE 180 GA+PVEGKPIAVYGAGTGLGVAHLVHVDKRWVSLPGEGGHVDFAPNSEEE IILE LR E Sbjct: 121 GAKPVEGKPIAVYGAGTGLGVAHLVHVDKRWVSLPGEGGHVDFAPNSEEEGIILEELRTE 180 Query: 181 IGHVSAERVLSGPGLVNLYRAIVKADNRLPENLKPKDITERALADSCTDCRRALSLFCVI 240 +GHVSAERVLSGPGLVNLY AIVK+D RLPENL+PKD+TERALAD+C DCRRALSLFCVI Sbjct: 181 LGHVSAERVLSGPGLVNLYHAIVKSDGRLPENLQPKDVTERALADTCIDCRRALSLFCVI 240 Query: 241 MGRFGGNLALNLGTFGGVFIAGGIVPRFLEFFKASGFRAAFEDKGRFKEYVHDIPVYLIV 300 MGRFGGNLAL LGTFGGV+IAGGIVPRFLEFFKASGFR FEDKGRFK +V DIPVYLIV Sbjct: 241 MGRFGGNLALTLGTFGGVYIAGGIVPRFLEFFKASGFRGGFEDKGRFKAFVQDIPVYLIV 300 Query: 301 HDNPGLLGSGAHLRQTLGHIL 321 HDNPGLLGSGAHLRQTLG +L Sbjct: 301 HDNPGLLGSGAHLRQTLGQVL 321 Lambda K H 0.322 0.141 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 503 Number of extensions: 8 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 321 Length of database: 321 Length adjustment: 28 Effective length of query: 293 Effective length of database: 293 Effective search space: 85849 Effective search space used: 85849 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 48 (23.1 bits)
Align candidate BWI76_RS20510 BWI76_RS20510 (glucokinase)
to HMM TIGR00749 (glk: glucokinase (EC 2.7.1.2))
../bin/blast/fastacmd -i /tmp/list.32718.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.32718.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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