GapMind for catabolism of small carbon sources

 

Alignments for a candidate for glk in Klebsiella michiganensis M5al

Align glucokinase (EC 2.7.1.1; EC 2.7.1.2; EC 2.7.1.8) (characterized)
to candidate BWI76_RS20510 BWI76_RS20510 glucokinase

Query= ecocyc::GLUCOKIN-MONOMER
         (321 letters)



>FitnessBrowser__Koxy:BWI76_RS20510
          Length = 321

 Score =  598 bits (1542), Expect = e-176
 Identities = 290/321 (90%), Positives = 306/321 (95%)

Query: 1   MTKYALVGDVGGTNARLALCDIASGEISQAKTYSGLDYPSLEAVIRVYLEEHKVEVKDGC 60
           MTK+ALVGDVGGTNARLALCD+ SGEIS+AKTYSGLDYPSLEAV++VYLEEH V+V+DGC
Sbjct: 1   MTKFALVGDVGGTNARLALCDLTSGEISRAKTYSGLDYPSLEAVVQVYLEEHNVQVEDGC 60

Query: 61  IAIACPITGDWVAMTNHTWAFSIAEMKKNLGFSHLEIINDFTAVSMAIPMLKKEHLIQFG 120
           IAIACPITGDWVAMTNHTWAFSIAEMKKNLGFSHLEIINDFTAVSMAIPMLK EHLIQFG
Sbjct: 61  IAIACPITGDWVAMTNHTWAFSIAEMKKNLGFSHLEIINDFTAVSMAIPMLKAEHLIQFG 120

Query: 121 GAEPVEGKPIAVYGAGTGLGVAHLVHVDKRWVSLPGEGGHVDFAPNSEEEAIILEILRAE 180
           GA+PVEGKPIAVYGAGTGLGVAHLVHVDKRWVSLPGEGGHVDFAPNSEEE IILE LR E
Sbjct: 121 GAKPVEGKPIAVYGAGTGLGVAHLVHVDKRWVSLPGEGGHVDFAPNSEEEGIILEELRTE 180

Query: 181 IGHVSAERVLSGPGLVNLYRAIVKADNRLPENLKPKDITERALADSCTDCRRALSLFCVI 240
           +GHVSAERVLSGPGLVNLY AIVK+D RLPENL+PKD+TERALAD+C DCRRALSLFCVI
Sbjct: 181 LGHVSAERVLSGPGLVNLYHAIVKSDGRLPENLQPKDVTERALADTCIDCRRALSLFCVI 240

Query: 241 MGRFGGNLALNLGTFGGVFIAGGIVPRFLEFFKASGFRAAFEDKGRFKEYVHDIPVYLIV 300
           MGRFGGNLAL LGTFGGV+IAGGIVPRFLEFFKASGFR  FEDKGRFK +V DIPVYLIV
Sbjct: 241 MGRFGGNLALTLGTFGGVYIAGGIVPRFLEFFKASGFRGGFEDKGRFKAFVQDIPVYLIV 300

Query: 301 HDNPGLLGSGAHLRQTLGHIL 321
           HDNPGLLGSGAHLRQTLG +L
Sbjct: 301 HDNPGLLGSGAHLRQTLGQVL 321


Lambda     K      H
   0.322    0.141    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 503
Number of extensions: 8
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 321
Length adjustment: 28
Effective length of query: 293
Effective length of database: 293
Effective search space:    85849
Effective search space used:    85849
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)

Align candidate BWI76_RS20510 BWI76_RS20510 (glucokinase)
to HMM TIGR00749 (glk: glucokinase (EC 2.7.1.2))

Software error:

../bin/blast/fastacmd -i /tmp/list.32718.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.32718.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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