Align acetaldehyde dehydrogenase; EC 1.2.1.10 (characterized)
to candidate BWI76_RS16905 BWI76_RS16905 acetaldehyde dehydrogenase (acetylating)
Query= CharProtDB::CH_002283 (316 letters) >FitnessBrowser__Koxy:BWI76_RS16905 Length = 316 Score = 552 bits (1422), Expect = e-162 Identities = 286/316 (90%), Positives = 300/316 (94%) Query: 1 MSKRKVAIIGSGNIGTDLMIKILRHGQHLEMAVMVGIDPQSDGLARARRMGVATTHEGVI 60 MSKRKVAIIGSGNIGTDLMIKILRHGQHLEMAVMVGIDP+SDGLARARRMGVATTHEGV Sbjct: 1 MSKRKVAIIGSGNIGTDLMIKILRHGQHLEMAVMVGIDPESDGLARARRMGVATTHEGVG 60 Query: 61 GLMNMPEFADIDIVFDATSAGAHVKNDAALREAKPDIRLIDLTPAAIGPYCVPVVNLEAN 120 GLM M EFADID VFDATSAGAHVKNDAALREAKP IR+IDLTPAAIGPYCVPVVNLEAN Sbjct: 61 GLMQMAEFADIDFVFDATSAGAHVKNDAALREAKPGIRVIDLTPAAIGPYCVPVVNLEAN 120 Query: 121 VDQLNVNMVTCGGQATIPMVAAVSRVARVHYAEIIASIASKSAGPGTRANIDEFTETTSR 180 + + NVNMVTCGGQATIPMVAAVSRVA+VHYAEIIASIASKSAGPGTRANIDEFTETTS+ Sbjct: 121 LAEGNVNMVTCGGQATIPMVAAVSRVAKVHYAEIIASIASKSAGPGTRANIDEFTETTSQ 180 Query: 181 AIEVVGGAAKGKAIIVLNPAEPPLMMRDTVYVLSDEASQDDIEASINEMAEAVQAYVPGY 240 AIE VGGAAKGKAIIVLNPAEPPLMMRDTVYVLS+ ASQ DI ASI EMA AVQAYVPGY Sbjct: 181 AIEKVGGAAKGKAIIVLNPAEPPLMMRDTVYVLSEAASQQDIAASIAEMAAAVQAYVPGY 240 Query: 241 RLKQRVQFEVIPQDKPVNLPGVGQFSGLKTAVWLEVEGAAHYLPAYAGNLDIMTSSALAT 300 RLKQ+VQFEVIP+DKPVNLPGVG+FSGLKTAV+LEVEGAAHYLPAYAGNLDIMTS+ALAT Sbjct: 241 RLKQQVQFEVIPEDKPVNLPGVGRFSGLKTAVYLEVEGAAHYLPAYAGNLDIMTSAALAT 300 Query: 301 AEKMAQSLARKAGEAA 316 AEKMAQ++ AGEAA Sbjct: 301 AEKMAQAMNDAAGEAA 316 Lambda K H 0.317 0.132 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 406 Number of extensions: 5 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 316 Length of database: 316 Length adjustment: 27 Effective length of query: 289 Effective length of database: 289 Effective search space: 83521 Effective search space used: 83521 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 48 (23.1 bits)
Align candidate BWI76_RS16905 BWI76_RS16905 (acetaldehyde dehydrogenase (acetylating))
to HMM TIGR03215 (acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10))
../bin/blast/fastacmd -i /tmp/list.4177.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.4177.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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