GapMind for catabolism of small carbon sources

 

Alignments for a candidate for pta in Klebsiella michiganensis M5al

Align phosphate acetyltransferase (EC 2.3.1.8) (characterized)
to candidate BWI76_RS20805 BWI76_RS20805 phosphate acetyltransferase

Query= BRENDA::P41790
         (338 letters)



>FitnessBrowser__Koxy:BWI76_RS20805
          Length = 338

 Score =  573 bits (1477), Expect = e-168
 Identities = 290/337 (86%), Positives = 313/337 (92%)

Query: 1   MIIERARELAVRAPARVVFPDALDERVLKAAHYLQQYGLARPVLVASPFALRQFALSHRM 60
           MIIERAR+LA+R+PARVVF DALD RVLKAAHYLQQ  LA+P+L+ASPFALRQFAL+HR+
Sbjct: 1   MIIERARQLALRSPARVVFADALDIRVLKAAHYLQQQRLAKPILIASPFALRQFALNHRL 60

Query: 61  AMDGIQVIDPHSNLSMRQRFAQRWLARAGEKTPPDAVEKLSDPLMFAAAMVSAGEADVCI 120
            MDG+Q++DP SN  +R  FA+RWL RAGEKTPPDA EKL+DPLMFAAAMV AG+ADVCI
Sbjct: 61  PMDGMQIVDPLSNRQIRAAFARRWLDRAGEKTPPDAEEKLNDPLMFAAAMVGAGQADVCI 120

Query: 121 AGNLSSTANVLRAGLRVIGLQPGCKTLSSIFLMLPQYAGPALGFADCSVVPQPTAAQLAD 180
           AGNLSSTANVLRAGLR+IGLQPGCKTLSSIFLMLPQYAGPALGFADCSVVPQPTAAQLAD
Sbjct: 121 AGNLSSTANVLRAGLRIIGLQPGCKTLSSIFLMLPQYAGPALGFADCSVVPQPTAAQLAD 180

Query: 181 IALASADTWRAITGEEPRVAMLSFSSNGSARHPNVANVQQATELVRERAPQLLVDGELQF 240
           IA+ASA+TW+AITGEEPRVAMLSFSSNGSARHPNVANVQQAT +VR+RAPQL+VDGELQF
Sbjct: 181 IAIASAETWQAITGEEPRVAMLSFSSNGSARHPNVANVQQATGIVRQRAPQLMVDGELQF 240

Query: 241 DAAFVPEVAAQKAPDSPLQGRANVMIFPSLEAGNIGYKITQRLGGYRAVGPLIQGLAAPL 300
           DAAFVPEVAAQKAP SPLQGRANVM+FPSLEAGNIGYKI QRLGGYRAVGPLIQGLAAPL
Sbjct: 241 DAAFVPEVAAQKAPASPLQGRANVMVFPSLEAGNIGYKIAQRLGGYRAVGPLIQGLAAPL 300

Query: 301 HDLSRGCSVQEIIELALVAAVPRQADVSRERSLHTLV 337
           HDLSRGCSVQEIIELALVAAVPRQ D SR     T V
Sbjct: 301 HDLSRGCSVQEIIELALVAAVPRQTDASRVNRSQTRV 337


Lambda     K      H
   0.321    0.134    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 467
Number of extensions: 7
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 338
Length adjustment: 28
Effective length of query: 310
Effective length of database: 310
Effective search space:    96100
Effective search space used:    96100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)

Align candidate BWI76_RS20805 BWI76_RS20805 (phosphate acetyltransferase)
to HMM TIGR00651 (pta: phosphate acetyltransferase (EC 2.3.1.8))

Software error:

../bin/blast/fastacmd -i /tmp/list.29082.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.29082.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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