Align acetate kinase (EC 2.7.2.1) (characterized)
to candidate BWI76_RS20235 BWI76_RS20235 acetate kinase
Query= BRENDA::P63411 (400 letters) >FitnessBrowser__Koxy:BWI76_RS20235 Length = 400 Score = 773 bits (1997), Expect = 0.0 Identities = 388/400 (97%), Positives = 393/400 (98%) Query: 1 MSSKLVLVLNCGSSSLKFAIIDAVNGDEYLSGLAECFHLPEARIKWKMDGSKQEAALGAG 60 MSSKLVLVLNCGSSSLKFAI+DAVNGDEYLSGLAECFHLPEARIKWKMDGSKQEA LGAG Sbjct: 1 MSSKLVLVLNCGSSSLKFAILDAVNGDEYLSGLAECFHLPEARIKWKMDGSKQEAELGAG 60 Query: 61 AAHSEALNFIVNTILAQKPELSAQLTAIGHRIVHGGEKYTSSVVIDESVIQGIKDSASFA 120 AAHSEALNFIVNTILAQKPELSAQLTAIGHRIVHGGEKYTSSVVID+SVIQGIKDSASFA Sbjct: 61 AAHSEALNFIVNTILAQKPELSAQLTAIGHRIVHGGEKYTSSVVIDDSVIQGIKDSASFA 120 Query: 121 PLHNPAHLIGIAEALKSFPQLKDKNVAVFDTAFHQTMPEESYLYALPYSLYKEHGVRRYG 180 PLHNPAHLIGIAEALKSFP LKDKNVAVFDTAFHQTMPEESYLYALPYSLYKEHGVRRYG Sbjct: 121 PLHNPAHLIGIAEALKSFPNLKDKNVAVFDTAFHQTMPEESYLYALPYSLYKEHGVRRYG 180 Query: 181 AHGTSHFYVTQEAAKMLNKPVEELNIITCHLGNGGSVSAIRNGKCVDTSMGLTPLEGLVM 240 AHGTSHFYVTQEAAK+LNKPVEELNIITCHLGNGGSVSAIRNGKCVDTSMGLTPLEGLVM Sbjct: 181 AHGTSHFYVTQEAAKVLNKPVEELNIITCHLGNGGSVSAIRNGKCVDTSMGLTPLEGLVM 240 Query: 241 GTRSGDIDPAIIFHLHDTLGMSVDQINKMLTKESGLLGLTEVTSDCRYVEDNYATKEDAK 300 GTRSGDIDPAIIFHLHD LGMSVD INKMLTKESGLLGLTEVTSDCRYVEDNY K DAK Sbjct: 241 GTRSGDIDPAIIFHLHDALGMSVDAINKMLTKESGLLGLTEVTSDCRYVEDNYQEKADAK 300 Query: 301 RAMDVYCHRLAKYIGSYTALMDGRLDAVVFTGGIGENAAMVRELSLGKLGVLGFEVDHER 360 RAMDVYCHRLAKYIGSYTALMDGRLDAVVFTGGIGENAAMVRELSLGKLGVLGFEVDHER Sbjct: 301 RAMDVYCHRLAKYIGSYTALMDGRLDAVVFTGGIGENAAMVRELSLGKLGVLGFEVDHER 360 Query: 361 NLAARFGKSGFINKEGTRPAVVIPTNEELVIAQDASRLTA 400 NLAARFGKSGFINKEGTRPA+VIPTNEELVIAQDA+RLTA Sbjct: 361 NLAARFGKSGFINKEGTRPAIVIPTNEELVIAQDANRLTA 400 Lambda K H 0.318 0.134 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 628 Number of extensions: 9 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 400 Length of database: 400 Length adjustment: 31 Effective length of query: 369 Effective length of database: 369 Effective search space: 136161 Effective search space used: 136161 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.9 bits)
Align candidate BWI76_RS20235 BWI76_RS20235 (acetate kinase)
to HMM TIGR00016 (ackA: acetate kinase (EC 2.7.2.1))
../bin/blast/fastacmd -i /tmp/list.8594.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.8594.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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