Align Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27) (characterized)
to candidate BWI76_RS02840 BWI76_RS02840 methylmalonate-semialdehyde dehydrogenase (CoA acylating)
Query= reanno::Koxy:BWI76_RS03070 (501 letters) >FitnessBrowser__Koxy:BWI76_RS02840 Length = 503 Score = 458 bits (1179), Expect = e-133 Identities = 229/480 (47%), Positives = 317/480 (66%), Gaps = 5/480 (1%) Query: 7 FIGGKTVTSGSNKTMPVFDPATGKVVREVTLSTAQEVSDAIQVARDAFESWSRTTPLRRA 66 F+ G+ S + + M V++P+TG+V+ + T QEV DA+ AR AF +WS T ++R+ Sbjct: 10 FVDGQWRVSQTERYMDVYNPSTGEVMAQAPCCTEQEVLDAVAAARKAFPAWSDTPAIKRS 69 Query: 67 RVMFNFKMLLEQHAEELAGIIVSEHGKVFSDAMGELTRGMEVVEFACGIPHLIKGEFSSD 126 ++MF + LL QH + L ++ E+GK + DA G++ + E E AC IP L+ GE D Sbjct: 70 QIMFRVRELLIQHQDRLTELVAKENGKAWGDAQGDVLKAKEGTELACSIPTLMAGENLMD 129 Query: 127 VGTGVDSYSLMQPLGVVAGITPFNFPAMVPM-WMFPLALACGNSFVLKPPALAPTAAVRL 185 G+D+ +P+GV AGI PFNFPAM+PM WM PL +A GN+ V+K ++ P + + Sbjct: 130 ASAGIDTNLYREPIGVFAGIVPFNFPAMIPMGWMAPLCVASGNTMVIKAASMTPMTCMEI 189 Query: 186 AELLKEAGLPDGVFNVVHCSNEDAEQLYRDPRIAAVSFVGSSGVAEHIYKTASAYGKRVQ 245 +L +EAG+PDGV NVV CS +A+ L P + VSFVGS+ V H+Y A+A+GKRVQ Sbjct: 190 TKLYQEAGVPDGVINVVTCSRNEADILLTHPDVNGVSFVGSTSVGLHVYSKAAAHGKRVQ 249 Query: 246 AFGAAKNHAIVMPDADLDATVNAIMGGAFGSAGERCMALPVVVAVGDETADKLIARLKPL 305 A AKNHA+V+ DA ++ T I+ AFG AGERCMALPVVV V +E ADKLIA + Sbjct: 250 ALCEAKNHALVLADAPINRTAAGIINAAFGCAGERCMALPVVV-VQEEIADKLIAAVVEK 308 Query: 306 VESLKVGPGCMRGKEENEMGPVVSDTHQKKVLGYIDKGVSEGATLVVDGRKPQVPGFEEG 365 + LK+GPG +R + +MGPV+S H++ V+G+I+KG+ EGA LV+DGR +VPG E G Sbjct: 309 AKQLKIGPGYLR---DTDMGPVISKDHKRSVIGWINKGIEEGAKLVLDGRDIKVPGQENG 365 Query: 366 YYVGGTLFDNVTPEMTIWREEIFGPVLGIVRVADYHSALELVNSHEFGNGSAVFTSNGHT 425 +YVG T+ D VT EM++ +EIFGPVL RV + L+L+N++ F NGS +FT +G+ Sbjct: 366 FYVGPTILDRVTEEMSVGTQEIFGPVLCFKRVKTFEEGLQLMNNNPFANGSVIFTQSGYY 425 Query: 426 AREFVHDVQAGMVGVNVPVPVPMAFHSFGGWKRSVFGALNVHGPDGVRFYTRMKTATVRW 485 AREF GMVG+NV +PVP+ F G K+S FG L+ G DGVRFYT K T RW Sbjct: 426 AREFQKRTHGGMVGINVGIPVPVGVFPFSGHKQSFFGDLHCLGKDGVRFYTESKCVTSRW 485 Lambda K H 0.319 0.135 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 616 Number of extensions: 21 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 501 Length of database: 503 Length adjustment: 34 Effective length of query: 467 Effective length of database: 469 Effective search space: 219023 Effective search space used: 219023 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 52 (24.6 bits)
Align candidate BWI76_RS02840 BWI76_RS02840 (methylmalonate-semialdehyde dehydrogenase (CoA acylating))
to HMM TIGR01722 (mmsA: methylmalonate-semialdehyde dehydrogenase (acylating) (EC 1.2.1.27))
../bin/blast/fastacmd -i /tmp/list.12606.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.12606.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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