Align acetate kinase (EC 2.7.2.1) (characterized)
to candidate 202039 SO2915 acetate kinase (NCBI ptt file)
Query= BRENDA::E3W769 (401 letters) >FitnessBrowser__MR1:202039 Length = 399 Score = 677 bits (1746), Expect = 0.0 Identities = 332/399 (83%), Positives = 370/399 (92%), Gaps = 1/399 (0%) Query: 1 MSDKLVLVLNCGSSSLKFAIIDAQSGDDKISGLAECFGLEDSRIKWKFNGGKNEAKLGAF 60 MS+KLVLVLNCGSSSLKFA+IDAQ+GDD+ISGLAECFGLEDSRIKWK NG K+E+ LGAF Sbjct: 1 MSNKLVLVLNCGSSSLKFAVIDAQTGDDQISGLAECFGLEDSRIKWKINGEKHESSLGAF 60 Query: 61 TAHREAVEFFIVNNILAEHPELAAQIKAIGHRIVHGGEKFTRSVIITPEVIQGIEDCASL 120 TAHREAVEF IVN ILA PELAAQI+A+GHRIVHGGEKFTRSVII VI+GIE+C+SL Sbjct: 61 TAHREAVEF-IVNKILAGQPELAAQIQAVGHRIVHGGEKFTRSVIIDEHVIKGIEECSSL 119 Query: 121 APLHNPAHLIGIRAAIASFPQLPQVTVFDTAFHQTMPEKAYIYALPYKLYREHSIRRYGM 180 APLHNPAHLIGIRAA+ASFP+LPQV VFDTAFHQ+MPE+++IYALPYKLYREH IRRYGM Sbjct: 120 APLHNPAHLIGIRAAMASFPKLPQVAVFDTAFHQSMPERSFIYALPYKLYREHGIRRYGM 179 Query: 181 HGTSHFYVCREAAKVLGKDVKDINVICAHLGNGASVAAIKGGKSVDTSMGLTPLEGLVMG 240 HGTSH +V REAAKVL K + + NVICAHLGNGASV A+KGGKSVDTSMGLTPLEGLVMG Sbjct: 180 HGTSHLFVSREAAKVLKKPLAETNVICAHLGNGASVTAVKGGKSVDTSMGLTPLEGLVMG 239 Query: 241 TRCGDLDPSIIFHLVKQLGYTLDEVNNLLNKQSGLLGISELTNDCRGIEEGYHDGHKGAT 300 TRCGD+DPSII+HLV QLGYTL+EVNNL+NKQSGLLGISELTNDCRGIEEGY DGHKGAT Sbjct: 240 TRCGDIDPSIIYHLVHQLGYTLEEVNNLMNKQSGLLGISELTNDCRGIEEGYADGHKGAT 299 Query: 301 LALDIFCYRLAKYIASYTVPLGRLDAIIFTGGIGENSNLIREKVLNLLEIFNFKVDDILN 360 LAL+IFCYRLAKYIASYTVPLGRLDA++FTGGIGENS++IREKVLN+L+IFNF VD N Sbjct: 300 LALEIFCYRLAKYIASYTVPLGRLDAVVFTGGIGENSDIIREKVLNMLQIFNFHVDSERN 359 Query: 361 KAARFGQQGVITQAGTPIAMVIPTNEEWVIAEDAIKLIT 399 KAARFG++G+IT + +AMVIPTNEEWVIAED+IKLIT Sbjct: 360 KAARFGKKGIITADNSTVAMVIPTNEEWVIAEDSIKLIT 398 Lambda K H 0.321 0.139 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 617 Number of extensions: 17 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 401 Length of database: 399 Length adjustment: 31 Effective length of query: 370 Effective length of database: 368 Effective search space: 136160 Effective search space used: 136160 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (23.9 bits)
Align candidate 202039 SO2915 (acetate kinase (NCBI ptt file))
to HMM TIGR00016 (ackA: acetate kinase (EC 2.7.2.1))
../bin/blast/fastacmd -i /tmp/list.15147.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.15147.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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