Align threonine ammonia-lyase (EC 4.3.1.19) (characterized)
to candidate 203422 SO4344 threonine dehydratase (NCBI ptt file)
Query= BRENDA::P04968 (514 letters) >FitnessBrowser__MR1:203422 Length = 545 Score = 598 bits (1542), Expect = e-175 Identities = 303/523 (57%), Positives = 389/523 (74%), Gaps = 12/523 (2%) Query: 2 ADSQPLSGAPEGAE-------YLRAVLRAPVYEAAQVTPLQKMEKLSSRLDNVILVKRED 54 A+SQP +P E YL+ +L + VY+ A+VTPL + KLS+RL + +KRED Sbjct: 12 AESQPAQASPASVEKSQLAQHYLQKILLSSVYDVAKVTPLSSLNKLSARLGCQVFLKRED 71 Query: 55 RQPVHSFKLRGAYAMMAGLTEEQKAHGVITASAGNHAQGVAFSSARLGVKALIVMPTATA 114 QPVHSFKLRGAY +A L++ + GV+ ASAGNHAQGVA S+A GV A+IVMP T Sbjct: 72 MQPVHSFKLRGAYNRIAQLSQAECQRGVVCASAGNHAQGVAMSAASRGVDAVIVMPETTP 131 Query: 115 DIKVDAVRGFGGEVLLHGANFDEAKAKAIELSQQQGFTWVPPFDHPMVIAGQGTLALELL 174 DIKVDAVR GG V+LHG FD+A A+ ++QQ+G ++ PFD VIAGQGT+A E+L Sbjct: 132 DIKVDAVRRLGGNVVLHGQAFDQANGFAMTMAQQEGRVYIAPFDDEAVIAGQGTIAQEML 191 Query: 175 QQDAHLDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVEAEDSACLKAALDAGHPVDLPR 234 QQ L+ +FVPVGGGGL AG+A K +MPQ+K++ VE ED+ACLKAA++AG PV L + Sbjct: 192 QQQRDLEVIFVPVGGGGLIAGIAAYYKAVMPQVKIVGVEPEDAACLKAAMEAGEPVTLSQ 251 Query: 235 VGLFAEGVAVKRIGDETFRLCQEYLDDIITVDSDAICAAMKDLFEDVRAVAEPSGALALA 294 VGLFA+GVAVKRIG E FR+ + +D ++TV SD ICAA+KD+FED RA+AEP+GAL+LA Sbjct: 252 VGLFADGVAVKRIGTEPFRVAKLCVDAVVTVTSDEICAAVKDIFEDTRAIAEPAGALSLA 311 Query: 295 GMKKYIALH----NIRGERLAHILSGANVNFHGLRYVSERCELGEQREALLAVTIPEEKG 350 G+KKY++ + + RGE++A ILSGANVNFH LRYVSERCELGEQ+EA+LAV +PE G Sbjct: 312 GLKKYVSTNATGESGRGEKVAAILSGANVNFHSLRYVSERCELGEQKEAVLAVKVPERPG 371 Query: 351 SFLKFCQLLGGRSVTEFNYRFADAKNACIFVGVRLSRGLEERKEILQMLNDGGYSVVDLS 410 SFL+FC+LL R +TEFNYRF+ A +F G+RL++G E ++I+ L D G+ V DLS Sbjct: 372 SFLRFCELLEKRVMTEFNYRFSSRDMAVVFAGIRLTKGHGELEQIINTLEDNGFEVQDLS 431 Query: 411 DDEMAKLHVRYMVGGRPSHPLQERLYSFEFPESPGALLRFLNTLGTYWNISLFHYRSHGT 470 DE AKLHVRYMVGG P PL+ERL+SFEFPE PGALL+FL TL + WNISLFHYR+HG Sbjct: 432 GDETAKLHVRYMVGGHPPEPLEERLFSFEFPEHPGALLKFLTTLQSKWNISLFHYRNHGA 491 Query: 471 DYGRVLAAFELGDHEP-DFETRLNELGYDCHDETNNPAFRFFL 512 +GRVLA FE+ + F+ L ELG+ +ET +PA++ FL Sbjct: 492 AFGRVLAGFEVPASDALPFQQFLTELGFVYQEETQSPAYQLFL 534 Lambda K H 0.321 0.138 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 776 Number of extensions: 25 Number of successful extensions: 5 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 514 Length of database: 545 Length adjustment: 35 Effective length of query: 479 Effective length of database: 510 Effective search space: 244290 Effective search space used: 244290 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 52 (24.6 bits)
Align candidate 203422 SO4344 (threonine dehydratase (NCBI ptt file))
to HMM TIGR01124 (ilvA: threonine ammonia-lyase, biosynthetic (EC 4.3.1.19))
../bin/blast/fastacmd -i /tmp/list.4371.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.4371.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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