Align Acetaldehyde dehydrogenase; Acetaldehyde dehydrogenase [acetylating]; EC 1.2.1.10 (characterized)
to candidate GFF4095 HP15_4035 acetaldehyde dehydrogenase
Query= SwissProt::Q52060 (312 letters) >FitnessBrowser__Marino:GFF4095 Length = 311 Score = 498 bits (1282), Expect = e-146 Identities = 250/311 (80%), Positives = 280/311 (90%) Query: 1 MNQKLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGV 60 M++K+K AIIGSGNIGTDLMIK+LRN K +EMGAMVGID SDGLARA RMGV TT+ GV Sbjct: 1 MSKKIKAAIIGSGNIGTDLMIKILRNGKNIEMGAMVGIDPESDGLARAARMGVATTHEGV 60 Query: 61 EGLIKLPEFADIDFVFDATSASAHVQNEALLRQAKPGIRLIDLTPAAIGPYCVPVVNLEE 120 +GL+K+PEFADID VFDATSA AH+ NE LR K I++ID+TPAAIGPYCVPVVNLE+ Sbjct: 61 DGLVKMPEFADIDIVFDATSAKAHMHNEVFLRGHKESIKIIDMTPAAIGPYCVPVVNLEQ 120 Query: 121 HLGKLNVNMVTCGGQATIPMVAAVSRVAKVHYAEIVASISSKSAGPGTRANIDEFTETTS 180 L + NVNMVTCGGQATIPMVAAVSRVAK HYAEIVASISSKSAGPGTRANIDEFT+TTS Sbjct: 121 QLQEGNVNMVTCGGQATIPMVAAVSRVAKAHYAEIVASISSKSAGPGTRANIDEFTQTTS 180 Query: 181 KAIEVIGGAAKGKAIIIMNPAEPPLIMRDTVYVLSAAADQAAVAASVAEMVQAVQAYVPG 240 +AIEV+GGA KGKAIII+NPAEPPL+MRDTVYVLS AAD+A V ASV EMVQAV +YVPG Sbjct: 181 RAIEVVGGAQKGKAIIILNPAEPPLLMRDTVYVLSDAADKAEVEASVEEMVQAVNSYVPG 240 Query: 241 YRLKQQVQFDVIPESAPLNIPGLGRFSGLKTSVFLEVEGAAHYLPAYAGNLDIMTSAALA 300 YRLKQ+VQFD IPE P+N+PGLGRFSGLKTS+FLEVEGAAHYLPAYAGNLDIMTSAAL Sbjct: 241 YRLKQKVQFDDIPEDQPMNVPGLGRFSGLKTSIFLEVEGAAHYLPAYAGNLDIMTSAALG 300 Query: 301 TAERMAQSMLN 311 TAER+A+S++N Sbjct: 301 TAERIAESLVN 311 Lambda K H 0.317 0.132 0.362 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 348 Number of extensions: 3 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 312 Length of database: 311 Length adjustment: 27 Effective length of query: 285 Effective length of database: 284 Effective search space: 80940 Effective search space used: 80940 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 48 (23.1 bits)
Align candidate GFF4095 HP15_4035 (acetaldehyde dehydrogenase)
to HMM TIGR03215 (acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10))
../bin/blast/fastacmd -i /tmp/list.26903.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.26903.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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