GapMind for catabolism of small carbon sources

 

Alignments for a candidate for pta in Marinobacter adhaerens HP15

Align Phosphate acetyltransferase; Phosphotransacetylase; EC 2.3.1.8 (characterized)
to candidate GFF1534 HP15_1498 phosphate acetyltransferase

Query= SwissProt::Q9I5A5
         (704 letters)



>FitnessBrowser__Marino:GFF1534
          Length = 709

 Score =  763 bits (1970), Expect = 0.0
 Identities = 405/699 (57%), Positives = 505/699 (72%), Gaps = 18/699 (2%)

Query: 14  GLTSISLGLLRALERAGLKVGFFKPIAQ-LHPGD----LGPERSSELVARTHGLDTPKPL 68
           GLTS+ LGLLRALER G+ VGF+KP  Q +H  +     G + S   V  +  L+ P P+
Sbjct: 4   GLTSVCLGLLRALERVGVSVGFYKPFCQAVHRAESMHNAGQDSSVAFVRASSHLNPPDPI 63

Query: 69  PLAQVERMLGDGQLDELLEEIISLYQRAAADKDVVIVEGMVPTRHASYAARVNFHLAKSL 128
            L + +++L  G+ D LLE ++  YQ+ A D DVVI+EG+VP R  +Y AR+N  +A++L
Sbjct: 64  ALKEAQQLLNRGKADYLLETVVGEYQKVARDVDVVIIEGLVPDRSEAYIARLNVEVARNL 123

Query: 129 DAEVILVSAPENETLTELTDRIEIQAQLFGGPRDPKVLGVILNKVRGEADAANAEDG--- 185
            +EVILVS P++    +L + ++  ++LF  P DP V+GVILNKV GE + +  E     
Sbjct: 124 GSEVILVSTPKDLDARQLDEELDFSSRLFASPSDPDVIGVILNKV-GEPEQSGLEPRSNN 182

Query: 186 ------VADFARRLTEHSPLLRDDFRLIGCIPWQDELNAARTRDIADLLSARVINAGDYE 239
                   D+    T  S      F L+  IPWQ +L A R  DIA  L   V+N G   
Sbjct: 183 NHPAPVTVDYQTECTVFS---EGRFHLLAEIPWQADLLAPRVSDIARELGLPVLNEGQMH 239

Query: 240 QRRVQKIVLCARAVPNTVQLLKPGVLVVTPGDRDDIILAASLAAMNGVPLAGLLLCSDFP 299
            RRVQK+ +CAR++ N  + L+PG L+VTPGDR+DI++A ++AA+NGVPLAGL+L     
Sbjct: 240 ARRVQKVSVCARSIRNMTETLRPGTLLVTPGDREDIVVATAVAALNGVPLAGLMLTGGLI 299

Query: 300 PDPRIMELCRGALQGGLPVLSVATGSYDTATNLNRMNKEIPVDDRERAERVTEFVAGHID 359
           PD R++ LC  AL+ GLPVL     +Y+TA  L  ++  IP+DD  R E+  E VA  ID
Sbjct: 300 PDQRVITLCHRALETGLPVLGSDANTYETAHMLANLSAAIPIDDPNRIEKAMEAVATRID 359

Query: 360 FEWLKQRCGTPRELRLSPPAFRYQVVQRAQKAGKRIVLPEGSEPRTVQAAAICQARGIAR 419
             WL+Q     R+ RLSPPAFRYQ+ +RA+ A KRI+LPEGSEPRTVQAA IC  R +AR
Sbjct: 360 TNWLQQHLKVARQDRLSPPAFRYQLSERARAANKRIILPEGSEPRTVQAAIICHQRRLAR 419

Query: 420 CVLLAKPEEVQAVAQAQGIVLPEGLEIIDPDLVRQRYVEPMVELRKGKGLNAPMAEQQLE 479
           C L+    E++ VA +Q + LP  +EIIDP  VRQRYV PMVELRK KGL + MAE  LE
Sbjct: 420 CALIGNAAEIKRVADSQDLELPGDIEIIDPGEVRQRYVAPMVELRKHKGLTSDMAEAMLE 479

Query: 480 DSVVLATMMLALDEVDGLVSGAIHTTASTIRPALQLIKTAPGYNLVSSVFFMLLPDQVLV 539
           D+VVL TMM+ALDE DGLVSGAIHTTA+T+RPALQLIKT     +VSSVFFMLLP QV+V
Sbjct: 480 DNVVLGTMMVALDEADGLVSGAIHTTANTVRPALQLIKTHEHAKVVSSVFFMLLPQQVVV 539

Query: 540 YGDCAVNPDPSASDLAEIAVQSAASAQAFGIPARVAMISYSTGDSGSGVDVDKVREATRL 599
           YGDCA+NPDP+A +LA+IA+QSA SA+AFGI   VAMISYSTG+SGSG DV+KVREATR+
Sbjct: 540 YGDCAINPDPNAEELADIAIQSAESAEAFGIEPLVAMISYSTGESGSGQDVEKVREATRI 599

Query: 600 AREQRPDLLIDGPLQYDAAAIASVGRQKAPNSPVAGQATVFIFPDLNTGNTTYKAVQRSA 659
           ARE+RPDLLIDGPLQYDAAAI SV R KAP+S VAG+ATVF+FPDLNTGNTTYKAVQRSA
Sbjct: 600 ARERRPDLLIDGPLQYDAAAIESVARSKAPDSKVAGKATVFVFPDLNTGNTTYKAVQRSA 659

Query: 660 DCVSVGPMLQGLRKPVNDLSRGALVEDIVYTIALTAIQA 698
           + VSVGPMLQGLRKPVNDLSRGALVEDIV+T+ALTA+QA
Sbjct: 660 NVVSVGPMLQGLRKPVNDLSRGALVEDIVFTVALTAVQA 698


Lambda     K      H
   0.319    0.136    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1258
Number of extensions: 46
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 704
Length of database: 709
Length adjustment: 39
Effective length of query: 665
Effective length of database: 670
Effective search space:   445550
Effective search space used:   445550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)

Align candidate GFF1534 HP15_1498 (phosphate acetyltransferase)
to HMM TIGR00651 (pta: phosphate acetyltransferase (EC 2.3.1.8))

Software error:

../bin/blast/fastacmd -i /tmp/list.20589.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.20589.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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