Align Ornithine carbamoyltransferase, catabolic; OTCase; EC 2.1.3.3 (characterized)
to candidate GFF4047 HP15_3987 ornithine carbamoyltransferase
Query= SwissProt::P08308 (336 letters) >FitnessBrowser__Marino:GFF4047 Length = 333 Score = 449 bits (1155), Expect = e-131 Identities = 219/333 (65%), Positives = 268/333 (80%), Gaps = 2/333 (0%) Query: 1 MAFNMHNRNLLSLMHHSTRELRYLLDLSRDLKRAKYTGTEQQHLKRKNIALIFEKTSTRT 60 MAFN+ NR+ L+L S RE+ +LL LS DLK AKY GTE L+ K+IALIFEK STRT Sbjct: 1 MAFNLKNRHFLTLRDFSPREIAFLLKLSADLKTAKYAGTEVPKLEGKDIALIFEKNSTRT 60 Query: 61 RCAFEVAAYDQGANVTYIDPNSSQIGHKESMKDTARVLGRMYDAIEYRGFKQEIVEELAK 120 R FEVAA+DQGA VTY+ P + IGHKES+KDTARVLGR+YDAIEYRGF Q +V+ELA+ Sbjct: 61 RVGFEVAAFDQGARVTYLGPTGTHIGHKESVKDTARVLGRVYDAIEYRGFGQSVVDELAQ 120 Query: 121 FAGVPVFNGLTDEYHPTQMLADVLTMREHSDKPLHDISYAYLGDARNNMGNSLLLIGAKL 180 +AGVPV+NGLT+E+HPTQ+LAD LTM+EH +KPL D++Y ++GDA NNMG+SLL+ GAK+ Sbjct: 121 YAGVPVYNGLTNEFHPTQILADFLTMQEHVEKPLRDVAYVFIGDAANNMGDSLLIGGAKM 180 Query: 181 GMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTDVWVSMGEP 240 GMDVR+ APKA WP + + A E+GA++T+TED AV GVDFV+TDVWVSMGEP Sbjct: 181 GMDVRLCAPKACWPGQAVQEEAQALAAETGARITITEDVDAAVAGVDFVYTDVWVSMGEP 240 Query: 241 VEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCLPAFHNSETKVGKQIAEQYPNLANGI 300 E W ERIK L+PYQVN +M TGNPRA+FMHCLPAFHN+ET VGK+I E Y + + Sbjct: 241 KEKWAERIKLLMPYQVNAALMAKTGNPRARFMHCLPAFHNTETVVGKEIQETYG--IDAM 298 Query: 301 EVTEDVFESPYNIAFEQAENRMHTIKAILVSTL 333 EVTE+VFESP +I F+QAENRMHTIKA+LV+TL Sbjct: 299 EVTEEVFESPASIVFDQAENRMHTIKAVLVATL 331 Lambda K H 0.318 0.133 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 386 Number of extensions: 6 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 336 Length of database: 333 Length adjustment: 28 Effective length of query: 308 Effective length of database: 305 Effective search space: 93940 Effective search space used: 93940 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 49 (23.5 bits)
Align candidate GFF4047 HP15_3987 (ornithine carbamoyltransferase)
to HMM TIGR00658 (argF: ornithine carbamoyltransferase (EC 2.1.3.3))
../bin/blast/fastacmd -i /tmp/list.27670.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.27670.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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