Align Ornithine carbamoyltransferase, anabolic; OTCase; EC 2.1.3.3 (characterized)
to candidate GFF771 HP15_750 ornithine carbamoyltransferase
Query= SwissProt::P11724 (305 letters) >FitnessBrowser__Marino:GFF771 Length = 304 Score = 389 bits (999), Expect = e-113 Identities = 193/299 (64%), Positives = 229/299 (76%) Query: 1 MSVRHFLSFMDYSPEELIGLIRRGSELKDLRNRGVLYEPLKSRVLGMVFEKASTRTRLSF 60 M+ RHFL+ D + EL L+ + L++ +G + + LK+RVL M+FEK+STRTR+SF Sbjct: 1 MAARHFLTLNDMTTNELESLVDHATALRNEWRQGKVRDSLKNRVLAMIFEKSSTRTRVSF 60 Query: 61 EAGMIQLGGQAIFLSPRDTQLGRGEPIGDSARVMSRMLDGVMIRTFAHATLTEFAAHSKV 120 EAGM QLGG A+FLSPRDTQLGRGEPI DSA V+S M+D VMIRTFAH T+ FAA S+V Sbjct: 61 EAGMTQLGGSAMFLSPRDTQLGRGEPIEDSAIVISSMVDAVMIRTFAHETVERFAAASRV 120 Query: 121 PVINGLSDDLHPCQLLADMQTFHEHRGSIQGKTVAWIGDGNNMCNSYIEAALKFDFQLRV 180 PVIN L+DD HPCQLLADMQTF EHRGSI+G TVAWIGDGNNMC+SYI AA +FDF L + Sbjct: 121 PVINALTDDFHPCQLLADMQTFREHRGSIRGATVAWIGDGNNMCHSYINAAAQFDFNLNI 180 Query: 181 ACPEGYEPKAEFVALAGDRLRVVRDPREAVAGAHLVSTDVWASMGQEDEAAARIALFRPY 240 ACPEGYEP + DR++V R+P EA A L+ TDVWASMGQEDE AR F Y Sbjct: 181 ACPEGYEPAESMLKGHEDRVKVFREPAEAARNAQLLVTDVWASMGQEDEQKARERAFSGY 240 Query: 241 QVNAALLDGAADDVLFMHCLPAHRGEEISEELLDDPRSVAWDQAENRLHAQKALLELLI 299 Q+N LL A DVLFMHCLPAHRGEEIS ++++ P SV W++AENRLHAQKALLE LI Sbjct: 241 QINPGLLSVADKDVLFMHCLPAHRGEEISADMMEHPASVVWNEAENRLHAQKALLEFLI 299 Lambda K H 0.322 0.136 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 306 Number of extensions: 7 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 305 Length of database: 304 Length adjustment: 27 Effective length of query: 278 Effective length of database: 277 Effective search space: 77006 Effective search space used: 77006 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 48 (23.1 bits)
Align candidate GFF771 HP15_750 (ornithine carbamoyltransferase)
to HMM TIGR00658 (argF: ornithine carbamoyltransferase (EC 2.1.3.3))
../bin/blast/fastacmd -i /tmp/list.2217.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.2217.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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