Align fructose-bisphosphate aldolase (EC 4.1.2.13) (characterized)
to candidate GFF2966 HP15_2910 fructose-1,6-bisphosphate aldolase
Query= BRENDA::Q602L6 (354 letters) >FitnessBrowser__Marino:GFF2966 Length = 354 Score = 540 bits (1390), Expect = e-158 Identities = 263/354 (74%), Positives = 301/354 (85%) Query: 1 MALISLRQLLDHAAEHGYGLPAFNVNNMEQIKAIMEAASAVDAPVILQGSAGARTYAGEP 60 MALIS+RQ+LDHAAEHGYG+PAFNVNN+EQ++AIMEAA D+PVI+Q SAGAR YAG P Sbjct: 1 MALISMRQMLDHAAEHGYGVPAFNVNNLEQMRAIMEAADRTDSPVIVQASAGARKYAGAP 60 Query: 61 FLRHLVRAAIEMYPHIPVCMHQDHGASPAVCIRSIQSGFSSVMMDGSLLEDMKTPASYAY 120 FLRHL+ AAIE +PHIPV MHQDHG SP+VC RSIQ GFSSVMMDGSL ED KTP Y Y Sbjct: 61 FLRHLILAAIEEFPHIPVVMHQDHGTSPSVCQRSIQLGFSSVMMDGSLGEDGKTPTDYEY 120 Query: 121 NVETTRKVVEMAHACGVSVEGELGCLGSLETGRAGKEDGHGAEGELDHSLLLTDPDEAAD 180 NV+ TR+ VEMAHACGVSVEGELGCLGSLETG+AG+EDG GAEG LDHS +LTDP+EAAD Sbjct: 121 NVDVTRRTVEMAHACGVSVEGELGCLGSLETGQAGEEDGIGAEGTLDHSQMLTDPEEAAD 180 Query: 181 FVRQTQVDALAIAIGTSHGAYKFTRKPTGQVLRIDRVKAIHQRIPTIHLVMHGSSSVPEE 240 FV++T VDALAIAIGTSHGAYKFTR PTG +L ID++KAIH RIP HLVMHGSSSVP+E Sbjct: 181 FVKKTHVDALAIAIGTSHGAYKFTRPPTGDILAIDQIKAIHARIPDTHLVMHGSSSVPQE 240 Query: 241 WAQMINDYGGDIGQTYGVPVEEIVEGIRHGVRKVNIDTDLRIASYGAMRRFMVEDRKNFD 300 W ++IN+YGG+I +TYGVPVEEIVEGI+HGVRKVNIDTDLR+AS GA+RRF+ E+ FD Sbjct: 241 WLKIINEYGGEIPETYGVPVEEIVEGIKHGVRKVNIDTDLRLASTGAVRRFLAENPAEFD 300 Query: 301 PRKLYKAAQTAMTAICRARYEAFGAAGQAAKIKPLRLEDMSLAYAQGKLDPIVR 354 PRK K AMT +C ARYEAFG AG A+KIKP+ LE M YA G+LDP V+ Sbjct: 301 PRKFLKETMKAMTDVCIARYEAFGCAGNASKIKPVNLERMFERYASGELDPKVK 354 Lambda K H 0.320 0.134 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 538 Number of extensions: 22 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 354 Length of database: 354 Length adjustment: 29 Effective length of query: 325 Effective length of database: 325 Effective search space: 105625 Effective search space used: 105625 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 49 (23.5 bits)
Align candidate GFF2966 HP15_2910 (fructose-1,6-bisphosphate aldolase)
to HMM TIGR01521 (fba: fructose-bisphosphate aldolase, class II, Calvin cycle subtype (EC 4.1.2.13))
../bin/blast/fastacmd -i /tmp/list.21028.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.21028.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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