Align UDP-glucose 4-epimerase; EC 5.1.3.2; Galactowaldenase; UDP-galactose 4-epimerase (uncharacterized)
to candidate GFF2094 HP15_2048 UDP-glucose 4-epimerase
Query= curated2:Q59083 (348 letters) >FitnessBrowser__Marino:GFF2094 Length = 342 Score = 349 bits (895), Expect = e-101 Identities = 180/319 (56%), Positives = 221/319 (69%), Gaps = 1/319 (0%) Query: 10 RVLVTGGAGYIGSHVLHALTDAGIPAVTIDDLSAGRREAIPAAVPLVEGDIGSAELLDRV 69 +VLVTGGAGYIGSHV+ L AG V D+LS G R A+ A LV GD+ ++ + Sbjct: 2 KVLVTGGAGYIGSHVVRQLGQAGHDIVVFDNLSTGYRWAVTAG-ELVVGDLADEAAIEDL 60 Query: 70 MRDHRVDAVMHFAGSIVVPESVVKPLDYYRNNTANSLTLLGACLRAGIDKVVFSSTAAVY 129 H+ +AV+HFA +IVVPESV PL YY NNT N+L LL A + + +VFSSTAAVY Sbjct: 61 FSRHQFEAVLHFAANIVVPESVANPLKYYSNNTRNTLNLLKAVEKHEVPYMVFSSTAAVY 120 Query: 130 GAPESVPIREDAPTVPINPYGASKLMTEQMLRDAGAAHGLRSVILRYFNVAGADPAGRTG 189 G PE + ED P PINPYGASK+M+E+M+ D AA L VILRYFNVAGA+P G G Sbjct: 121 GMPEQTVLTEDLPLAPINPYGASKMMSERMIMDLAAASSLNYVILRYFNVAGANPEGLLG 180 Query: 190 QATPVATHLIKVACQALLGRRPPLAIFGTDYDTPDGTCIRDYIHVSDLADAHVLALLHLR 249 QATP ATHLIKVAC+ + +R +++FGTDYDT DGTCIRDYIHV DLA AHV+AL ++ Sbjct: 181 QATPEATHLIKVACECVTEQREGMSVFGTDYDTRDGTCIRDYIHVEDLAKAHVMALDYMA 240 Query: 250 RGGGSLLMNCGYGRGASVREVVRTLEEVSGEQVPATFADRRPGDPPQLVAGADRIREQLG 309 GG S +MNCGYGRG +VREV+ ++ SG P T RR GDP L+A IR+ LG Sbjct: 241 DGGHSKVMNCGYGRGFTVREVIDVVKAQSGVDFPVTETGRRAGDPAALMADNTLIRQTLG 300 Query: 310 WVPKHDRLDGIVRSALSWE 328 W P +D LD IV +AL+WE Sbjct: 301 WQPDYDNLDTIVGTALAWE 319 Lambda K H 0.319 0.136 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 364 Number of extensions: 12 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 348 Length of database: 342 Length adjustment: 29 Effective length of query: 319 Effective length of database: 313 Effective search space: 99847 Effective search space used: 99847 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 49 (23.5 bits)
Align candidate GFF2094 HP15_2048 (UDP-glucose 4-epimerase)
to HMM TIGR01179 (galE: UDP-glucose 4-epimerase GalE (EC 5.1.3.2))
../bin/blast/fastacmd -i /tmp/list.20055.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.20055.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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