GapMind for catabolism of small carbon sources

 

Alignments for a candidate for glk in Marinobacter adhaerens HP15

Align glucokinase (EC 2.7.1.1; EC 2.7.1.2; EC 2.7.1.8) (characterized)
to candidate GFF2219 HP15_2173 glucokinase

Query= ecocyc::GLUCOKIN-MONOMER
         (321 letters)



>FitnessBrowser__Marino:GFF2219
          Length = 321

 Score =  254 bits (649), Expect = 2e-72
 Identities = 136/313 (43%), Positives = 185/313 (59%), Gaps = 1/313 (0%)

Query: 2   TKYALVGDVGGTNARLALCDIASGEISQAKTYSGLDYPSLEAVIRVYLEEHKVEVKDG-C 60
           T Y+LVGD+GGTNAR AL +  + +    K     +Y +L+  +R YL    V   DG C
Sbjct: 4   THYSLVGDIGGTNARFALVEQGTVQPRAIKILPCGEYANLDDAVRDYLARVGVSEVDGAC 63

Query: 61  IAIACPITGDWVAMTNHTWAFSIAEMKKNLGFSHLEIINDFTAVSMAIPMLKKEHLIQFG 120
           +A+A P+ G  V MTN+ W F   E++   G+S  ++INDFTA+++ +P +  +HL+   
Sbjct: 64  LAVASPVRGTQVRMTNNHWLFDTEEVRAQFGWSRFKVINDFTAMALGVPHVANDHLVHVC 123

Query: 121 GAEPVEGKPIAVYGAGTGLGVAHLVHVDKRWVSLPGEGGHVDFAPNSEEEAIILEILRAE 180
           G      +P  V G GTGLGV+ LV ++  WV L  EGGHVDFAP  + E  +L IL+A 
Sbjct: 124 GGPGDSRRPRLVMGPGTGLGVSGLVPIEHGWVPLMTEGGHVDFAPTDDAEMAVLRILKAR 183

Query: 181 IGHVSAERVLSGPGLVNLYRAIVKADNRLPENLKPKDITERALADSCTDCRRALSLFCVI 240
            G VS ER+L G GL+NLY+A  +          P+ IT  A+ ++    R  LS FC I
Sbjct: 184 FGRVSVERILCGQGLLNLYQAHAEIQGVAAPLDAPEKITAAAVENTDRLARHTLSHFCEI 243

Query: 241 MGRFGGNLALNLGTFGGVFIAGGIVPRFLEFFKASGFRAAFEDKGRFKEYVHDIPVYLIV 300
           +GR  GN  L LG+ GGVF+ GGI+PRFLEFF  S FR  FEDKGR +  +   PVY++ 
Sbjct: 244 LGRVAGNGVLTLGSTGGVFLCGGILPRFLEFFLESPFRNGFEDKGRMRPLLEFTPVYVVT 303

Query: 301 HDNPGLLGSGAHL 313
               GLLG+   L
Sbjct: 304 EPYTGLLGAAEAL 316


Lambda     K      H
   0.322    0.141    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 320
Number of extensions: 13
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 321
Length adjustment: 28
Effective length of query: 293
Effective length of database: 293
Effective search space:    85849
Effective search space used:    85849
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)

Align candidate GFF2219 HP15_2173 (glucokinase)
to HMM TIGR00749 (glk: glucokinase (EC 2.7.1.2))

Software error:

../bin/blast/fastacmd -i /tmp/list.13972.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.13972.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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